A B C D E F G H I J K L M N O P Q R S T U V W X
All Classes All Packages

A

ACCOUNTING_GRACE_TIME_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

Timeout for waiting for the accounting info of a job to appear

ACCOUNTING_GRACE_TIME_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

Timeout for waiting for the accounting info of a job to appear

accountingAvailable - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

accountingAvailable() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

adaptor - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

adaptor - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

adaptor - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler

Adaptor - Class in nl.esciencecenter.xenon.adaptors

Adaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.Adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

A description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

Description of the adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

A description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

A description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

Human readable description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

Human readable description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Description of the adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

Human readable description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

A description of this adaptor

ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

Human readable description of this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

The locations supported by the adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

The locations supported by the adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

The locations supported by this adaptor

ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

The locations supported by this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

Name of the local adaptor is defined in the engine.

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Name of the local adaptor is defined in the engine.

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

The name of this adaptor

ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

AdaptorDescription - Interface in nl.esciencecenter.xenon

AdaptorStatus contains information on a specific adaptor.

AdaptorLoader - Class in nl.esciencecenter.xenon.adaptors

AdaptorLoader() - Constructor for class nl.esciencecenter.xenon.adaptors.AdaptorLoader

adaptorName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

adaptorName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

adaptorName - Variable in exception nl.esciencecenter.xenon.XenonException

adaptorName - Variable in exception nl.esciencecenter.xenon.XenonRuntimeException

ADAPTORS_PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

ADAPTORS_PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

addArgument(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Add a command line argument for the executable.

addBytesCopied(long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

addDeletedJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

addEnvironment(String, String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Add a variable to the environment of the executable.

addHop(int, ClientSession, SSHUtil.Tunnel) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

addJavaArgument(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

addJavaClasspathElement(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

addJavaOption(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Adds a JVM option.

addJavaSystemProperty(String, String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Adds a system property to the current set of system properties.

addProperties(Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Adds the specified properties to the current ones and checks if their names and types are correct.

addSchedulerArgument(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Add a scheduler specific argument.

addToBuffer(byte[], int) - Method in class nl.esciencecenter.xenon.utils.OutputReader

AGENT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Enable the use of an ssh-agent

AGENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Enable the use of an ssh-agent

AGENT_FORWARDING - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Enable the use of ssh-agent-forwarding

AGENT_FORWARDING - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Enable the use of ssh-agent-forwarding

ALLOCATION_FILL_UP - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

ALLOCATION_PE_SLOTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

ALLOCATION_ROUND_ROBIN - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

allocationRule - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

AllocationRule() - Constructor for enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

appendToFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Open an existing file and return an OutputStream to append data to this file.

areSamePaths(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

arguments - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The arguments to pass to the executable.

asCSList(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Create a single comma separated string out of a list of strings.

assertDirectoryExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertFileExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertFileIsSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertIsOpen() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertNonNullOrEmpty(String, String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

assertNotNull(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertParentDirectoryExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPathExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPathIsDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPathIsFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPathIsNotDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPathNotExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

assertPositive(long, String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

AtScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.at

AtScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

AtSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.at

AtSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

AttributeNotSupportedException - Exception in nl.esciencecenter.xenon.filesystems

Signals that a requested file attribute is not supported by the underlying file system implementation.

AttributeNotSupportedException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException

AttributeNotSupportedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException

AtUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.at

AtUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

AUTOMATICALLY_ADD_HOST_KEY - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Enable strict host key checking.

AUTOMATICALLY_ADD_HOST_KEY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Enable strict host key checking.

available() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

B

BadParameterException - Exception in nl.esciencecenter.xenon.adaptors.schedulers

Signals that a parameter has an invalid value.

BadParameterException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException

BadParameterException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException

BAR_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

BatchProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers

BatchProcess wraps an InteractiveProcess to emulate a batch process.

BatchProcess(FileSystem, Path, JobDescription, String, InteractiveProcessFactory, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

bitsToPermissions(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

BOOLEAN - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type BOOLEAN can be either "true" or "false".

buffer - Variable in class nl.esciencecenter.xenon.utils.OutputReader

BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

The buffer size to use when copying data.

BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

The buffer size to use when copying data.

BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

The buffer size to use when copying data.

BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

The buffer size to use when copying data.

BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.utils.OutputReader

bufferSize - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

bufferSize - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

bufferSize - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder

buildCommand(JobDescription) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

bytesCopied - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

bytesCopied - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

bytesCopied() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Get the number of bytes that have been copied.

bytesCopied() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

bytesToCopy - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

bytesToCopy - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

bytesToCopy() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Get the number of bytes that need to be copied for the entire copy operation.

bytesToCopy() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

C

callback - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy

canAllocateMultiNode(int, int) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

Check if pe can allocate X number of cores per node on Y number of nodes

canAllocateSingleNode(int) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

Check if pe can allocate all slots on the same node

canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

canAppend() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

cancel() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

cancel(String) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Cancel a copy operation.

cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

cancelJob(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Cancel a job.

cancelled - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

canCreateSymboliclinks() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

Can this adaptor create symbolic links ? In third party copy, a file is copied between two remote locations, without passing through the local machine first.

canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

canReadSymboliclinks() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

Can this adaptor read symbolic links ?

certfile - Variable in class nl.esciencecenter.xenon.credentials.CertificateCredential

This member variables holds the URI of the file containing the certificate.

CertificateCredential - Class in nl.esciencecenter.xenon.credentials

A container for security Information based upon certificates.

CertificateCredential(String, String, char[]) - Constructor for class nl.esciencecenter.xenon.credentials.CertificateCredential

Constructs a CertificateCredential out of a username, a certificate file containing a private key, and an optional passphrase.

CertificateNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.shared.ssh

Signals that a certificate file could not be found.

CertificateNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException

CertificateNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException

channel - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

channel - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

checkAdaptorName(String) - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

checkClientReply(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

checkClientReply(FTPClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

checkForNullAndSeparator(char, List<String>) - Static method in class nl.esciencecenter.xenon.filesystems.Path

checkIfContains(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Checks if the given text contains any of the given options.

checkQueue(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

Checks if the provided queue name is valid, and throws an exception otherwise.

checkQueue(String[], String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Check if the given queueName is presents in queueNames.

checkQueueNames(String[]) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

Checks if the queue names given are valid, and throw an exception otherwise.

checkQueueNames(String[]) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Checks if the queue names given are valid, and throw an exception otherwise.

checkType(XenonPropertyDescription, String, String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

checkVersion() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

checkVersion(Document) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

checkWorkingDirectory(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Check if the given working directory exists.

cleanup() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

cleanupJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

cleanupJob(List<JobExecutor>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

cleanValue(String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Remove suffix from a string if present.

clear(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns a copy of this XenonProperties that contains all properties but clears the properties that start with the given prefix.

clearUpdateRequest() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Clear the update signal and wake up any waiting threads

client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem.CloseableClient

client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

client - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem.CloseableClient

close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

close() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory

close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory

close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory

close() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

close() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

close() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Close this FileSystem.

close() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Close this Scheduler.

close(Closeable, String) - Method in class nl.esciencecenter.xenon.utils.StreamForwarder

Closes the input stream, thereby stopping the stream forwarder, and closing the output stream.

CloseableClient(FTPClient) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem.CloseableClient

closed - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem.CloseableClient

closed - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

closeServer() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

closeStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

CommandNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.schedulers.local

Signals that a command could not be found.

CommandNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException

CommandNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException

CommandRunner - Class in nl.esciencecenter.xenon.adaptors.schedulers.local

Runs a command.

CommandRunner(String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

CommandRunner(String, File, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

COMPONENT_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

The name of this component, for use in exceptions

concat(String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Concatinate a series of Strings using a StringBuilder.

connect(String, Credential) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

connect(String, SshClient, String, Credential, int, long) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

Connect an existing SshClient to the server at location and authenticate using the given credential.

connectAndAuthenticate(String, SshClient, String, int, UserCredential, long) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

connection - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

connection - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory

CONNECTION_TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Property for maximum history length for finished jobs

ConnectionLostException - Exception in nl.esciencecenter.xenon.adaptors.filesystems

Signals that a connection was lost.

ConnectionLostException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException

ConnectionLostException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException

connectToServer(String, int, FTPClient) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

contains(PosixFilePermission, PosixFilePermission...) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

Check if a sequence of PosixFilePermissions contains a specific option.

containsAny(String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Returns if the given input String contains any of the option Strings given.

containsCredential(String) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

Check if the key is stored in this CredentialMap.

content - Variable in class nl.esciencecenter.xenon.utils.InputWriter

convertAttributes(Path, FTPFile) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

convertAttributes(Path, SftpClient.Attributes) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

convertFromOctal(String) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

convertTime(FileTime) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

convertToOctal(Set<PosixFilePermission>) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

copy(Path, FileSystem, Path, CopyMode, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Asynchronously Copy an existing source path to a target path on a different file system.

CopyCallback() - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

CopyCancelledException - Exception in nl.esciencecenter.xenon.filesystems

CopyCancelledException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.CopyCancelledException

copyFile(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Copy a single file to another file system.

copyIdentifier - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

CopyMode - Enum in nl.esciencecenter.xenon.filesystems

CopyOption is an enumeration containing all possible options for copying a file.

CopyMode() - Constructor for enum nl.esciencecenter.xenon.filesystems.CopyMode

copyRecursive(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

CopyStatus - Interface in nl.esciencecenter.xenon.filesystems

CopyStatus contains status information for a specific copy operation.

CopyStatusImplementation(String, String, long, long, XenonException) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

copySymbolicLink(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Copy a symbolic link to another file system (optional operation).

coresPerTask - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The number of cores needed per tasks.

count - Variable in class nl.esciencecenter.xenon.utils.DaemonThreadFactory

create(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Create a new FileSystem using the adaptor that connects to a data store at the default location using the default credentials to get access.

create(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Create a new Scheduler using the adaptor connecting to the default location and using the default credentials to get access.

create(String, String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Create a new FileSystem using the adaptor that connects to a data store at location using the default credentials to get access.

create(String, String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Create a new Scheduler using the adaptor connecting to the location using the default credentials to get access.

create(String, String, Credential) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Create a new FileSystem using the adaptor that connects to a data store at location using the credentials to get access.

create(String, String, Credential) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Create a new Scheduler using the adaptor connecting to the location using credentials to get access.

create(String, String, Credential, Map<String, String>) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Create a new FileSystem using the adaptor that connects to a data store at location using the credentials to get access.

create(String, String, Credential, Map<String, String>) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Create a new Scheduler using the adaptor connecting to the location using credentials to get access.

CREATE - nl.esciencecenter.xenon.filesystems.CopyMode

Copy to a new destination file, failing if the file already exists.

createDirectories(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Creates a new directory, failing if the directory already exists.

createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

createDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Creates a new directory, failing if the directory already exists.

createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

createFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Creates a new empty file, failing if the file already exists.

createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

createInteractiveProcess(JobDescription, String, String, long) - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory

createInteractiveProcess(JobDescription, String, String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory

createInteractiveProcess(JobDescription, String, String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory

createOutputStream(FileSystem, Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

createSftpClient() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

createSSHClient() - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

Create a new SshClient with a default configuration similar to a stand-alone SSH client.

createSSHClient(boolean, boolean, boolean, boolean, boolean) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

Create a new SshClient with the desired configuration.

createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Creates a new symbolic link, failing if the link already exists (optional operation).

creationTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The creation time of this file

credential - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

credential - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

credential - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler

Credential - Interface in nl.esciencecenter.xenon.credentials

Credential represents a user credential uses to gain access to a resource.

CredentialMap - Class in nl.esciencecenter.xenon.credentials

A Credential consisting of a collection of Credentials each uniquely identified by a String (typically a host name or host alias).

CredentialMap() - Constructor for class nl.esciencecenter.xenon.credentials.CredentialMap

Create a new CredentialMap using null as the default credential.

CredentialMap(UserCredential) - Constructor for class nl.esciencecenter.xenon.credentials.CredentialMap

Creates a new CredentialMap and set the default credential to defaultCredential.

CredentialNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.shared.ssh

Signals that a credential could not be found.

CredentialNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException

CredentialNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException

currentID - Static variable in class nl.esciencecenter.xenon.adaptors.Adaptor

D

DaemonThreadFactory - Class in nl.esciencecenter.xenon.utils

DaemonThreadFactory(String) - Constructor for class nl.esciencecenter.xenon.utils.DaemonThreadFactory

Deadline - Class in nl.esciencecenter.xenon.adaptors.schedulers

Deadline() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.Deadline

No need to use this constructor, use static methods instead.

DEFAULT_BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.utils.StreamForwarder

DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

The default SSH port

DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

The default SSH port

DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

The default SSH port

DEFAULT_QUEUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

DEFAULT_SEPARATOR - Static variable in class nl.esciencecenter.xenon.filesystems.Path

The default separator to use.

DEFAULT_SSH_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

DEFAULT_START_TIME - Static variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The default start time

DEFAULT_TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

defaultCredential - Variable in class nl.esciencecenter.xenon.credentials.CredentialMap

DefaultCredential - Class in nl.esciencecenter.xenon.credentials

This class represents the default credential that may be used by the various adaptors.

DefaultCredential() - Constructor for class nl.esciencecenter.xenon.credentials.DefaultCredential

DefaultCredential(String) - Constructor for class nl.esciencecenter.xenon.credentials.DefaultCredential

defaultQueueName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

defaultRuntime - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

defaultValue - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription

delete(Path, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Deletes an existing path.

deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Delete an empty directory.

deletedJobs - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

deleteFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Delete a file.

deleteLocal(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

description - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor

description - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

description - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription

destination - Variable in class nl.esciencecenter.xenon.utils.InputWriter

destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

Destroy (stop) process.

destroy() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process

destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

destroy(int, TimeUnit) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

Destroy (stop) process.

destroyProcess(ProcessHandle, int, TimeUnit) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

DirectoryNotEmptyException - Exception in nl.esciencecenter.xenon.filesystems

Signals that directory is not empty.

DirectoryNotEmptyException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException

DirectoryNotEmptyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException

DISABLE_ACCOUNTING_USAGE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

Should the accounting usage be disabled?

documentBuilder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

documentBuilder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

done - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder

done() - Method in class nl.esciencecenter.xenon.utils.StreamForwarder

Tell the daemon thread that we are done.

DONE_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

DONE_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

In completed state, the job has terminated and all processes have returned exit code 0.

DOUBLE - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type DOUBLE can be converted into a 64-bit floating point number using Double.valueOf(String).

E

echo(Formatter, String, String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

elements - Variable in class nl.esciencecenter.xenon.filesystems.Path

The path elements in this path

emptyMap(int) - Static method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Creates empty mutable Map with sufficient initial capacity.

EndOfFileException - Exception in nl.esciencecenter.xenon.adaptors.filesystems

Signals that an end-of-file was encountered.

EndOfFileException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException

EndOfFileException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException

endsWith(String) - Method in class nl.esciencecenter.xenon.filesystems.Path

Tests if this Path ends with the given Path represented as a String.

endsWith(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path

Tests if this Path ends with the given Path.

environment - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The environment variables and their values

equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

equals(Object) - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential

equals(Object) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

equals(Object) - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential

equals(Object) - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential

equals(Object) - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential

equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.Path

equals(Object) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

equals(Object) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

equals(Object) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

EQUALS_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

err - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

error - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

error - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

ERROR_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

ex - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

exception - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

exception - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

exception - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

exclude(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns a copy of this XenonProperties that contains all properties except the properties that start with the given prefix.

EXEC_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

execute/search by group

EXEC_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

execute/search by others

EXEC_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

execute/search by owner

executable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is the file executable ?

executable - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The executable to run.

exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

exists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Tests if a path exists.

exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

exitcodeFromString(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

exitStatus - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

expandTilde(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Expand the tilde in a String representation of a path by the users home directory, as provided by the user.home property.

expireTime - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

extractCredential(SshdSocketAddress, Credential) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

extractCredentials(String, SshdSocketAddress[], Credential) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

extractLocations(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

Extract a series of locations from a location string.

extractSocketAddress(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

F

factory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

factory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

FAILED_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

These are the states a job can be in when it has failed: FAILED: the job terminated with non-zero exit code or other failure condition.

FileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems

FileAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

fileAdaptors - Static variable in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

filesystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

filesystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

FileSystem - Class in nl.esciencecenter.xenon.filesystems

FileSystem represent a (possibly remote) file system that can be used to access data.

FileSystem(String, String, String, Credential, Path, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem

FileSystem.CopyCallback - Class in nl.esciencecenter.xenon.filesystems

FileSystem.CopyStatusImplementation - Class in nl.esciencecenter.xenon.filesystems

CopyStatus contains status information for a specific copy operation.

FileSystem.PendingCopy - Class in nl.esciencecenter.xenon.filesystems

FileSystemAdaptorDescription - Interface in nl.esciencecenter.xenon.filesystems

FileSystemClosedException - Exception in nl.esciencecenter.xenon.filesystems

Signals that a unknown Copy handle was provided.

FileSystemClosedException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException

FileSystemClosedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException

FILL_UP - nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

filter(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns a new XenonProperties that contains only the properties whose key start with a certain prefix.

filterOnKey(Map<K, V>, Predicate<K>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

filterUsingPredicate(Predicate<String>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

findFTPFile(FTPFile[], Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

findInteractiveJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

findInteractiveJobInMap(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

findJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

findJob(List<JobExecutor>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

finished - Variable in class nl.esciencecenter.xenon.utils.InputWriter

finished - Variable in class nl.esciencecenter.xenon.utils.OutputReader

flush() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

FORMAT_VERSION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

ftpClient - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

FtpFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp

FtpFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

FtpFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp

FtpFileSystem(String, String, String, Path, int, FTPClient, Credential, FtpFileAdaptor, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

FtpFileSystem.CloseableClient - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp

future - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy

G

GATEWAY - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Add gateway to access machine.

GATEWAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Add gateway to access machine.

generate(JobDescription, Path, int) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

generate(JobDescription, Path, int) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

generate(JobDescription, Path, GridEngineSetup) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

generateInteractiveArguments(JobDescription, Path, UUID, int) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

generateJobErrorScript(String, int, String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

generateJobIDScript(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

generateJobInfoScript(JobDescription, String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

generateJobScript(JobDescription, String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

generateListingScript() - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

generateParallelEnvironmentSpecification(JobDescription, GridEngineSetup, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

generateParallelScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

generateScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

generateSerialScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

get(String) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

Retrieve the UserCredential stored using the key.

getAbsolutePath() - Method in class nl.esciencecenter.xenon.filesystems.Path

Return a String representation of this Path interpreted as an absolute path.

getAdaptorByName(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

getAdaptorByName(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

getAdaptorDescription(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Gives the description of the adaptor with the given name.

getAdaptorDescription(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Gives the description of the adaptor with the given name.

getAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Gives a list of the descriptions of the available adaptors.

getAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Gives a list of the descriptions of the available adaptors.

getAdaptorName() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the name of the adaptor that created this FileSystem.

getAdaptorName() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the name of the adaptor that created this Scheduler.

getAdaptorNames() - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem

Gives a list names of the available adaptors.

getAdaptorNames() - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler

Gives a list names of the available adaptors.

getAllocationRule() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

getArguments() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the command line arguments of the executable.

getArguments() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Constructs the command line arguments from the class path, the JVM options, the system properties, the main and the java arguments.

getArguments(char) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Constructs the command line arguments from the class path, the JVM options, the system properties, the main and the java arguments.

getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

getAttributes(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the PathAttributes of an existing path.

getAttributes(Path, DavResource) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

getBooleanProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of a boolean property with the given name.

getBufferSize() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

getBytesCopied() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

getBytesToCopy() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

getCertificateFile() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential

Returns the certificate file.

getCopyIdentifier() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Get the copy identifier for which this CopyStatus was created.

getCopyIdentifier() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

getCoresPerTask() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the number of cores needed for each task.

getCount() - Method in class nl.esciencecenter.xenon.utils.DaemonThreadFactory

getCreationTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the creation time for this file.

getCreationTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the creation time for this file.

getCredential() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the credential that this FileSystem is using.

getCredential() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the credential that this Scheduler is using.

getCurrentJobID() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getCurrentWorkingDirectory(FTPClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

getCurrentWorkingDirectory(SftpClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

getDeadline(long) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.Deadline

Calculate the epoch timestamp when a timeout will expire.

getDefault() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

Returns the default UserCredential.

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getDefaultQueueName() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the name of the default queue.

getDefaultRuntime() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getDefaultRuntime() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

getDefaultRuntime() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getDefaultRuntime() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

getDefaultRuntime() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the default runtime of a job in minutes.

getDefaultValue() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription

Returns the default value for this property.

getDescription() - Method in interface nl.esciencecenter.xenon.AdaptorDescription

Get the description of the adaptor.

getDescription() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor

getDescription() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription

Returns a human readable description of this property.

getDirectoryPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

getDoubleProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of an double property with the given name.

getEnvironment() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the environment of the executable.

getError() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get the exception produced by the Job or while retrieving the status.

getException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Get the exception produced by the queue, or null if hasException() returns false.

getException() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

getException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Get the exception produced by the Copy or while retrieving the status.

getException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

getException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get the exception produced by the Job or while retrieving the status.

getException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Get the exception produced by the queue, or null if hasException() returns false.

getExecutable() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the path to the executable.

getExecutable() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the executable.

getExeFile(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get the exit code for the Job.

getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

getExitCode() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get the exit code for the Job.

getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

getExitStatus() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process

getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

getExpireTime() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

getFileAdaptor(String) - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getFileAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getFileAdaptorNames() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getFileName() - Method in class nl.esciencecenter.xenon.filesystems.Path

Get the file name or null if the Path is empty.

getFileNameAsString() - Method in class nl.esciencecenter.xenon.filesystems.Path

Get the file name as a String, or null if the Path is empty.

getFilePath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

getFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

getFileSystem() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Retrieve the FileSystem used internally by this Scheduler.

getFTPFileInfo(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

getGroup() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the group of this file.

getGroup() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the group of this file (optional operation).

getHost(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

getInfoFile(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

getIntegerProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of an integer property with the given name.

getIntegerProperty(String, int) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of an integer property with the given name.

getJavaArguments() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the arguments for the main class.

getJavaClasspath() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the java class path.

getJavaMain() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the main class of the java application.

getJavaOptions() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the JVM options.

getJavaSystemProperties() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Returns the java system properties.

getJobDescription() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get the job identifier of the Job for which this JobStatus was created.

getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

Get the identifier of the job for which this Streams was created.

getJobIdentifier() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get the job identifier of the Job for which this JobStatus was created.

getJobIdentifier() - Method in interface nl.esciencecenter.xenon.schedulers.Streams

Get the identifier of the job for which this Streams was created.

getJobIDFile(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

getJobIDs(Map<String, Map<String, String>>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

getJobInfo(String[]) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getJobs(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get all job identifier of jobs currently in (one ore more) queues.

getJobs(List<JobExecutor>, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getJobStatus(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the status of a Job.

getJobStatus(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

Get job status.

getJobStatus(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

Get job status.

getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the status of all specified jobs.

getJobStatusFromQacctInfo(Map<String, String>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

getJobStatusFromQstatInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

getJobStatusFromQstatInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

getJobStatusFromSacctInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

getJobStatusFromScontrolInfo(Map<String, String>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

getJobStatusFromSqueueInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

getKeytabFile() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential

getKilled() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getLastAccessTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the last access time for this file.

getLastAccessTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the last access time for this file.

getLastModifiedTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the last modified time for this file.

getLastModifiedTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the last modified time for this file.

getLocalFileAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

getLocalFileAttributes(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

getLocalFileSystems() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Returns all local FileSystems.

getLocalRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Return the locally valid root element of an String representation of an absolute path.

getLocalRootlessPath(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Return the local root less path of an absolute path.

getLocalSeparator() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Returns the local file system path separator character.

getLocation() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the location of the FileSystem.

getLocation() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the location that this Scheduler is connected to.

getLongProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of an long property with the given name.

getMaxMemory() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the amount of memory needed for process (in MBytes).

getMaxRuntime() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the maximum job duration time in minutes.

getMessage() - Method in exception nl.esciencecenter.xenon.XenonException

getMessage() - Method in exception nl.esciencecenter.xenon.XenonRuntimeException

getMultiNodeParallelEnvironment(int, int, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

Try to find a parallel environment that can be used to get X number of cores per node on Y number of nodes

getName() - Method in interface nl.esciencecenter.xenon.AdaptorDescription

Get the name of the adaptor.

getName() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor

getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get the name of the Job for which this JobStatus was created.

getName() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the job name.

getName() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get the name of the Job for which this JobStatus was created.

getName() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription

Returns the name of the property.

getName(int) - Method in class nl.esciencecenter.xenon.filesystems.Path

Get an element of this Path.

getNameCount() - Method in class nl.esciencecenter.xenon.filesystems.Path

Get the number of elements in the Path.

getNaturalProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of an natural number property (e.g.

getNewUniqueID() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor

getNextCopyID() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

getOwner() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the owner of this file.

getOwner() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the owner of this file (optional operation).

getParallelEnvironments() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

getParallelEnvironments(GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

getParent() - Method in class nl.esciencecenter.xenon.filesystems.Path

Get the parent Path, or null if this Path does not have a parent.

getPassword() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential

Gets the password.

getPassword(SessionContext, NamedResource, int) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider

getPath() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the path these attributes belong to.

getPath() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the path these attributes belong to.

getPathSeparator() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the path separator used by this file system.

getPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the permissions of this file.

getPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the permissions of this file (optional operation).

getPermissions(FTPFile) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

getPort(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

getPosixFilePermission(int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

getPpn() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

getProperties() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the properties used to create this FileSystem.

getProperties() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the properties used to create this Scheduler.

getProperties(XenonPropertyDescription[], String, Map<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

getProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of a property with the given name without checking its type.

getProperty(String, XenonPropertyDescription.Type) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

getPropertyNames() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns a sorted list of all supported property names.

getQacctInfo(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getQstatInfo() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getQstatInfo() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Get the queue name.

getQueueName() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the queue name;

getQueueName() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Get the queue name.

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getQueueNames() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the queue names supported by this Scheduler.

getQueueNames(GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

getQueues(String[], GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getQueueStatus(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the status of the queue.

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Get the status of all queues.

getQueueStatuses(Map<String, Map<String, String>>, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

getQueueStatusFromSInfo(Map<String, Map<String, String>>, String, Scheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

getRelativePath() - Method in class nl.esciencecenter.xenon.filesystems.Path

Return a String representation of this Path interpreted as a relative path.

getResult() - Method in class nl.esciencecenter.xenon.utils.OutputReader

Returns the data that has been read from the InputStream as a byte array.

getResultAsString() - Method in class nl.esciencecenter.xenon.utils.OutputReader

Returns the data that has been read from the InputStream as a String.

getSacctInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getScheduler() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Get the Scheduler that produced this QueueStatus.

getScheduler() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Get the Scheduler that produced this QueueStatus.

getSchedulerAdaptor(String) - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getSchedulerAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getSchedulerAdaptorNames() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

getSchedulerArguments() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the scheduler specific arguments.

getSchedulerSpecificInformation() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get scheduler specific information on the Job.

getSchedulerSpecificInformation() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Get scheduler specific information on the queue.

getSchedulerSpecificInformation() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get scheduler specific information on the Job.

getSchedulerSpecificInformation() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Get scheduler specific information on the queue.

getSControlInfo(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getSeparator() - Method in class nl.esciencecenter.xenon.filesystems.Path

Get the separator.

getSession() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

getSinfoInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getSingleNodeParallelEnvironment(int, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

Try to find a parallel environment that can be used to get a number of cores on a single node

getSize() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Get the size of this file in bytes.

getSize() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Get the size of this file in bytes.

getSizeProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of a size property with the given name.

getSlots() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

getSlots() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

getSqueueInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

getStartTime() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the start time of the job.

getState() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getState() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Get the state of the Job.

getState() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Get the state of the Copy operation.

getState() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

getState() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Get the state of the Job.

getStatsFile(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

getStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getStatus(String) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Retrieve the status of an copy.

getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

Returns the standard error stream of job.

getStderr() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Gets the path to the file to which the executable must redirect stderr.

getStderr() - Method in interface nl.esciencecenter.xenon.schedulers.Streams

Returns the standard error stream of job.

getStdin() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

Returns the standard input stream of job.

getStdin() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Gets the path to the file from which the executable must redirect stdin.

getStdin() - Method in interface nl.esciencecenter.xenon.schedulers.Streams

Returns the standard input stream of job.

getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

Returns the standard output stream of job.

getStdout() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Gets the path to the file to which the executable must redirect stdout.

getStdout() - Method in interface nl.esciencecenter.xenon.schedulers.Streams

Returns the standard output stream of job.

getStream(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

getStreams() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcess

getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

getStringProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Retrieves the value of a string property with the given name.

getSupportedCredentials() - Method in interface nl.esciencecenter.xenon.AdaptorDescription

Get the supported credential types for this adaptor.

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingSchedulerAdaptor

getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

getSupportedLocations() - Method in interface nl.esciencecenter.xenon.AdaptorDescription

Get the supported locations for this adaptor.

getSupportedLocations() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor

getSupportedProperties() - Method in interface nl.esciencecenter.xenon.AdaptorDescription

Returns an array containing all properties this adaptor supports.

getSupportedProperties() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor

getSupportedProperties() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingSchedulerAdaptor

getSupportedProperties() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns the descriptions of all supported properties.

getTasks() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the number of tasks in this job.

getTasksPerNode() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the number of tasks per node.

getTempSpace() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Get the amount of temp space needed for process (in MBytes).

getType() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription

Returns the type of the property.

getUniqueID() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

getUsername() - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential

getUsername() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential

getUsername() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential

getUsername() - Method in interface nl.esciencecenter.xenon.credentials.UserCredential

Returns the user name associated with this credential.

getWorkingDirectory() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

getWorkingDirectory() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Get the current working directory of this file system.

getWorkingDirectory() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Gets the path of the working directory for the executable.

getWorkingDirPath(JobDescription, Path) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Retrieve a working directory from a JobDescription and, if necessary, resolve it against a current working directory.

GIGA - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

One giga is a kilo*kilo*kilo

GridEngineScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Interface to the GridEngine command line tools.

GridEngineScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

GridEngineSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

GridEngineSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

GridEngineSetup - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Holds some info on the specifics of the machine we are connected to, such as queues and parallel environments.

GridEngineSetup(String[], Map<String, QueueInfo>, Map<String, ParallelEnvironmentInfo>, int) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

Testing constructor.

GridEngineSetup(GridEngineScheduler) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

GridEngineUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Generator for GridEngine job script.

GridEngineUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

GridEngineXmlParser - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Parses xml output from various grid engine command line tools.

GridEngineXmlParser(boolean) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

group - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The group of this file

GROUP_EXECUTE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Execute/search permission, group.

GROUP_EXECUTE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

GROUP_READ - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Read permission, group.

GROUP_READ_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

GROUP_WRITE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Write permission, group.

GROUP_WRITE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

H

hasException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Has the Job or job retrieval produced a exception ?

hasException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Did the queue produce an exception ?

hasException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Has the Copy or status retrieval produced a exception ?

hasException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

hasException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Has the Job or job retrieval produced a exception ?

hasException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Did the queue produce an exception ?

hashCode() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

hashCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

hashCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

hashCode() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential

hashCode() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

hashCode() - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential

hashCode() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential

hashCode() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential

hashCode() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

hashCode() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

hashCode() - Method in class nl.esciencecenter.xenon.filesystems.Path

hashCode() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

hashCode() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

hashCode() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

hasKeyValue() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

hasNext() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

hasNext() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator

hasRun - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

hasRun() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

haveRecentlySeen(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

hidden - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is the file hidden ?

hops - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

HORIZONTAL_LINE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

I

identifiersAsCSList(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

IGNORE - nl.esciencecenter.xenon.filesystems.CopyMode

Skip the copy if the destination file if it already exists.

IGNORE_VERSION_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

Should the grid engine version on the target machine be ignored ?

IGNORE_VERSION_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

Should the grid engine version on the target machine be ignored ?

ignoreVersion - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

in - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter

in - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder

IncompatibleVersionException - Exception in nl.esciencecenter.xenon.adaptors.schedulers

Signals that an adaptor is unable to connect to a resource due to version problems.

IncompatibleVersionException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException

IncompatibleVersionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException

IncompleteJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers

Signals that a JobDescription is missing required options.

IncompleteJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException

IncompleteJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException

index - Variable in class nl.esciencecenter.xenon.filesystems.Path.PathIterator

INFO - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Local queue information start with this prefix.

INFO - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Ssh adaptor information start with this prefix.

INFO_FILE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

inputStream - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

InputWriter - Class in nl.esciencecenter.xenon.utils

A simple input writer that uses a daemon thread to write from an String to an OutputStream.

InputWriter(String, OutputStream) - Constructor for class nl.esciencecenter.xenon.utils.InputWriter

Create a new InputWriter that writes content to the destination.

INTEGER - nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

INTEGER - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type INTEGER can be converted into a 32-bit signed integer using Integer.valueOf(String).

interactive - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

InteractiveProcess - Interface in nl.esciencecenter.xenon.adaptors.schedulers

InteractiveProcessFactory - Interface in nl.esciencecenter.xenon.adaptors.schedulers

InvalidCredentialException - Exception in nl.esciencecenter.xenon

Signals that an invalid credential was used to access a resource.

InvalidCredentialException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidCredentialException

InvalidCredentialException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidCredentialException

InvalidJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers

Signals that a JobDescription contains invalid values for certain options.

InvalidJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException

InvalidJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException

InvalidLocationException - Exception in nl.esciencecenter.xenon

Signals that an invalid location was provided.

InvalidLocationException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidLocationException

InvalidLocationException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidLocationException

InvalidOptionsException - Exception in nl.esciencecenter.xenon.filesystems

Signals that an invalid combination of OpenOptions have been specified.

InvalidOptionsException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException

InvalidOptionsException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException

InvalidPathException - Exception in nl.esciencecenter.xenon.filesystems

Signals that an end-of-file was encountered.

InvalidPathException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidPathException

InvalidPathException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidPathException

InvalidPropertyException - Exception in nl.esciencecenter.xenon

Signals that a property has a different type than the get method it was retrieved with.

InvalidPropertyException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidPropertyException

InvalidPropertyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidPropertyException

InvalidResumeTargetException - Exception in nl.esciencecenter.xenon.filesystems

Signals that the data in the target of a resume does not match the data in the source.

InvalidResumeTargetException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException

InvalidResumeTargetException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException

isAbsolute - Variable in class nl.esciencecenter.xenon.filesystems.Path

Does path start with / ?

isAbsolute() - Method in class nl.esciencecenter.xenon.filesystems.Path

isCancelled() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

isClosed() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

isConnectionless() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

isDirectory - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is this a directory ?

isDirectory() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to a directory ?

isDirectory() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to a directory ?

isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Is the Job done.

isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

isDone() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process

isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

isDone() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Is the Copy done?

isDone() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

isDone() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Is the Job done.

isDoneOrFailedState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

Is the given state a done or failed state ?

isDoneState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

Is the given state a done state ?

isDotDot(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

isEmbedded() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription

Is this an embedded scheduler ? Embedded schedulers are implemented inside the Xenon process itself.

isEmpty() - Method in class nl.esciencecenter.xenon.filesystems.Path

Is this Path empty ?

isExecutable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to an executable file ?

isExecutable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to an executable file ?

isExecutable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

isFailedState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

Is the given state a failed state ?

isFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter

Poll if the InputWriter has finished writing.

isFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader

Returns if the OutputReader has finished (i.e., has reached the end-of-stream on the input).

isHidden() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to an hidden file ?

isHidden() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to an hidden file ?

isLinux() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Returns if we are currently running on Linux.

isLinuxRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Check if root only contains a valid Linux root element, which is "/".

isLocal(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

isLocalRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Check if root contains a locally valid root element, such as "C:" on Windows or "/" on Linux and OSX.

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

isOpen() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory

isOpen() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

isOpen() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Return if the connection to the FileSystem is open.

isOpen() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Test if the connection of this Scheduler is open.

isOSX() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Returns if we are currently running on OSX.

isOSXRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Check if root contains a valid OSX root element, which is "/".

isOther - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is this an other type of file ?

isOther() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is the path not a file, link or directory ?

isOther() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Is the path not a file, link or directory ?

isPendingState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

Is the given state a pending state ?

isReadable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to an readable file ?

isReadable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to an readable file ?

isReadable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

isRegular - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is this a regular file ?

isRegular() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to a regular file ?

isRegular() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to a regular file ?

isRunning - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

isRunning() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Is the Job running.

isRunning() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Is the Copy still running?

isRunning() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

isRunning() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Is the Job running.

isRunningState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

Is the given state a running state ?

isSSH(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

isStarted() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

isStartPerJob() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Will the executable be started per job? true by default.

isStartPerTask() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Will the executable be started per task? false by default.

isSymbolicLink - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is this a symbolic link ?

isSymbolicLink() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to a symbolic link ?

isSymbolicLink() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to a symbolic link ?

isWhitespace(char) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

isWindows() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Returns if we are currently running on Windows.

isWindowsRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Check if root only contains a valid Windows root element such as "C:".

isWritable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Does the path refer to a writable file ?

isWritable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes

Does the path refer to a writable file ?

isWritable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

iterator() - Method in class nl.esciencecenter.xenon.filesystems.Path

Create an Iterator that returns all possible sub Paths of this Path, in order of increasing length.

J

javaArguments - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription

javaClasspath - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription

JavaJobDescription - Class in nl.esciencecenter.xenon.utils

A JobDescription specialized in Java applications.

JavaJobDescription() - Constructor for class nl.esciencecenter.xenon.utils.JavaJobDescription

javaMain - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription

javaOptions - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription

javaPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

javaPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

javaSystemProperties - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription

JobCanceledException - Exception in nl.esciencecenter.xenon.adaptors.schedulers

Signals that a jobs has been canceled by the user.

JobCanceledException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException

JobCanceledException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException

JobDescription - Class in nl.esciencecenter.xenon.schedulers

JobDescription contains a description of a job that can be submitted to a Scheduler.

JobDescription() - Constructor for class nl.esciencecenter.xenon.schedulers.JobDescription

Create a JobDescription.

JobDescription(JobDescription) - Constructor for class nl.esciencecenter.xenon.schedulers.JobDescription

Create a JobDescription by copying an existing one.

JobExecutor - Class in nl.esciencecenter.xenon.adaptors.schedulers

JobExecutor(String, FileSystem, Path, InteractiveProcessFactory, JobDescription, String, boolean, long, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

jobID - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

JOBID_FILE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

JobQueueScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers

JobQueueScheduler(String, String, String, Credential, InteractiveProcessFactory, FileSystem, Path, int, long, long, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

JOBS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Local job information start with this prefix.

JOBS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Ssh job information start with this prefix.

jobSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

jobSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

JobSeenMap - Class in nl.esciencecenter.xenon.adaptors.schedulers

JobSeenMap() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

JobSeenMap(long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

jobsFromStatus(String, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

jobsFromStatus(String, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

jobsSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

JobStatus - Interface in nl.esciencecenter.xenon.schedulers

JobStatus contains status information for a specific job.

JobStatusImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers

JobStatus contains status information for a specific job.

JobStatusImplementation(String, String, String, Integer, XenonException, boolean, boolean, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

Create a JobStatus.

jobWasDeleted(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

K

keySet() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

Returns a Set view of the keys contained in this map.

KeytabCredential - Class in nl.esciencecenter.xenon.credentials

KeytabCredential(String, String) - Constructor for class nl.esciencecenter.xenon.credentials.KeytabCredential

keytabFile - Variable in class nl.esciencecenter.xenon.credentials.KeytabCredential

kill() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

killed - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

KILLED_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

KILO - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

One kilo is 1024

L

lastAccessTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The last access time of this file

lastModifiedTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The last modified time of this file

lastSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

Map with the last seen time of jobs.

line - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

list - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

list(Path, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

List all entries in the directory dir.

list(Path, ArrayList<PathAttributes>, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Returns an (optionally recursive) listing of the entries in a directory dir.

listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

listDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Return the list of entries in a directory.

LOAD_SSH_CONFIG - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Load the OpenSSH config file by default.

LOAD_SSH_CONFIG - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Load the OpenSSH config file by default.

LOAD_STANDARD_KNOWN_HOSTS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Load the known_hosts file by default.

LOAD_STANDARD_KNOWN_HOSTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Load the known_hosts file by default.

loadAdaptors() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

loaded - Static variable in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

loadFileSystemAdaptors() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

loadSchedulerAdaptors() - Static method in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

LocalFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.local

LocalFiles implements an Xenon Files adaptor for local file operations.

LocalFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

LocalFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.local

LocalFileSystem(String, String, Credential, String, Path, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

LocalFileSystemUtils - Class in nl.esciencecenter.xenon.utils

LocalFileSystemUtils() - Constructor for class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

LocalInteractiveProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers.local

LocalInteractiveProcess implements a InteractiveProcess for local interactive processes.

LocalInteractiveProcess(JobDescription, String, String) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

LocalInteractiveProcessFactory - Class in nl.esciencecenter.xenon.adaptors.schedulers.local

LocalInteractiveProcessFactory() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory

LocalSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.local

LocalFiles implements an Xenon Jobs adaptor for local job operations.

LocalSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

location - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

location - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

LOGGER - Static variable in class nl.esciencecenter.xenon.utils.InputWriter

LOGGER - Static variable in class nl.esciencecenter.xenon.utils.StreamForwarder

login(Credential, FTPClient) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

loginWithCredentialOrDefault(FTPClient, Credential) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

LONG - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type LONG can be converted into a 64-bit signed long using Long.valueOf(String).

M

map - Variable in class nl.esciencecenter.xenon.credentials.CredentialMap

mapFromElement(Element) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

mark(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

markSupported() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

MAX_HISTORY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Property for maximum history length for finished jobs

MAX_HISTORY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Maximum history length for finished jobs

MAX_POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

The maximum allowed value for the polling delay

maxMemory - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The maximum amount of memory needed (in MB) on each node/process.

maxRuntime - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The maximum run time in minutes.

maybeThrowException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

maybeThrowException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

maybeThrowException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus

Throws the exception that occured during copying, if it exists.

maybeThrowException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

maybeThrowException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus

Throws the exception produced by the Job or while retrieving the status, if it exists.

maybeThrowException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus

Throws the exception produced by the queue if it exists.

MEGA - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

One mega is a kilo*kilo

mergeTuples(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

mergeValidProperties(XenonPropertyDescription[]...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

MILLISECONDS_PER_MINUTE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Number of ms.

MIN_POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

The minimal allowed value for the polling delay

MINUTES_PER_HOUR - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

MINUTES_PER_HOUR - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

MULTI_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

multiExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

multiQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

MULTIQ - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Local multi queue properties start with this prefix.

MULTIQ - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Local multi queue properties start with this prefix.

MULTIQ_MAX_CONCURRENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Property for the maximum number of concurrent jobs in the multi queue.

MULTIQ_MAX_CONCURRENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Property for the maximum number of concurrent jobs in the multi queue.

N

name - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor

name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

name - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The name of the job.

name - Variable in class nl.esciencecenter.xenon.utils.DaemonThreadFactory

name - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription

NAME - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

NATURAL - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type NATURAL may contain only positive values, including 0.

needsSizeBeforehand() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

needsSizeBeforehand() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

NEWLINE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

newThread(Runnable) - Method in class nl.esciencecenter.xenon.utils.DaemonThreadFactory

next() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

next() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator

nextCopyID - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

nextKey() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

nextUniqueID - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

nextValue() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

nl.esciencecenter.xenon - package nl.esciencecenter.xenon

This package is the main entry point into the Xenon API.

nl.esciencecenter.xenon.adaptors - package nl.esciencecenter.xenon.adaptors

nl.esciencecenter.xenon.adaptors.filesystems - package nl.esciencecenter.xenon.adaptors.filesystems

nl.esciencecenter.xenon.adaptors.filesystems.ftp - package nl.esciencecenter.xenon.adaptors.filesystems.ftp

nl.esciencecenter.xenon.adaptors.filesystems.local - package nl.esciencecenter.xenon.adaptors.filesystems.local

nl.esciencecenter.xenon.adaptors.filesystems.sftp - package nl.esciencecenter.xenon.adaptors.filesystems.sftp

nl.esciencecenter.xenon.adaptors.filesystems.webdav - package nl.esciencecenter.xenon.adaptors.filesystems.webdav

nl.esciencecenter.xenon.adaptors.schedulers - package nl.esciencecenter.xenon.adaptors.schedulers

nl.esciencecenter.xenon.adaptors.schedulers.at - package nl.esciencecenter.xenon.adaptors.schedulers.at

nl.esciencecenter.xenon.adaptors.schedulers.gridengine - package nl.esciencecenter.xenon.adaptors.schedulers.gridengine

nl.esciencecenter.xenon.adaptors.schedulers.local - package nl.esciencecenter.xenon.adaptors.schedulers.local

nl.esciencecenter.xenon.adaptors.schedulers.slurm - package nl.esciencecenter.xenon.adaptors.schedulers.slurm

nl.esciencecenter.xenon.adaptors.schedulers.ssh - package nl.esciencecenter.xenon.adaptors.schedulers.ssh

nl.esciencecenter.xenon.adaptors.schedulers.torque - package nl.esciencecenter.xenon.adaptors.schedulers.torque

nl.esciencecenter.xenon.adaptors.shared.ssh - package nl.esciencecenter.xenon.adaptors.shared.ssh

nl.esciencecenter.xenon.credentials - package nl.esciencecenter.xenon.credentials

This package contains classes and interfaces for managing credentials.

nl.esciencecenter.xenon.filesystems - package nl.esciencecenter.xenon.filesystems

This package contains classes and interfaces for manipulating files.

nl.esciencecenter.xenon.schedulers - package nl.esciencecenter.xenon.schedulers

This package contains the classes and interfaces used to run jobs.

nl.esciencecenter.xenon.utils - package nl.esciencecenter.xenon.utils

This package is contains several utility classes.

normalize() - Method in class nl.esciencecenter.xenon.filesystems.Path

Normalize this Path by removing as many redundant path elements as possible.

NoSpaceException - Exception in nl.esciencecenter.xenon.adaptors.filesystems

Signals that an end-of-file was encountered.

NoSpaceException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException

NoSpaceException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException

NoSuchCopyException - Exception in nl.esciencecenter.xenon.filesystems

Signals that a unknown Copy handle was provided.

NoSuchCopyException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException

NoSuchCopyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException

NoSuchJobException - Exception in nl.esciencecenter.xenon.schedulers

Signals that a Job was not found.

NoSuchJobException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchJobException

NoSuchJobException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchJobException

NoSuchPathException - Exception in nl.esciencecenter.xenon.filesystems

Signals that a path does not exists.

NoSuchPathException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchPathException

NoSuchPathException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchPathException

NoSuchQueueException - Exception in nl.esciencecenter.xenon.schedulers

Signals that a unknown queue was provided.

NoSuchQueueException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException

NoSuchQueueException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException

NotConnectedException - Exception in nl.esciencecenter.xenon.adaptors

Signals that there was no connection.

NotConnectedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.NotConnectedException

NotConnectedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.NotConnectedException

O

OK_CODE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

open - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory

OS_PROPERTY - Static variable in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

OTHERS_EXECUTE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Execute/search permission, others.

OTHERS_EXECUTE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

OTHERS_READ - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Read permission, others.

OTHERS_READ_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

OTHERS_WRITE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Write permission, others.

OTHERS_WRITE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

out - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner

out - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder

output - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

OutputReader - Class in nl.esciencecenter.xenon.utils

A simple output reader that uses a daemon thread to read from an InputStream and buffer this data.

OutputReader(InputStream) - Constructor for class nl.esciencecenter.xenon.utils.OutputReader

Create an OutputReader that reads from source.

outputStream - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

owner - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The owner of this file

OWNER_EXECUTE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Execute/search permission, owner.

OWNER_EXECUTE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

OWNER_READ - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Read permission, owner.

OWNER_READ_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

OWNER_WRITE - nl.esciencecenter.xenon.filesystems.PosixFilePermission

Write permission, owner.

OWNER_WRITE_BIT - Static variable in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

P

ParallelEnvironmentInfo - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Class that holds some info on parallel environments used in Grid Engine.

ParallelEnvironmentInfo(String, int, ParallelEnvironmentInfo.AllocationRule, int) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

ParallelEnvironmentInfo(Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

ParallelEnvironmentInfo.AllocationRule - Enum in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

parallelEnvironments - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

parallelEnvironments - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

parseATQJobInfo(String, Set<String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

Parse one or more lines of queue info as produced by atq.

parseDocument(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

parseDocument(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

parseFileDumpJobInfo(String, Set<String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

Parse one or more records of job info as produced by the generateListingScript script.

parseInfoFile(String[], int, HashMap<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseJob(String[], int, HashMap<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseJobID(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseJobIDFromLine(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Get a JobID (number) from a line of input.

parseJobInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

Parses job info from "qstat -xml"

parseJobInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

Parses job info from "qstat -x"

parseJobLine(String, Set<String>, HashMap<String, Map<String, String>>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseKeyValueLine(String, String, Map<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

parseKeyValueLines(String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Parses lines containing single key/value pairs separated by the given separator, possibly surrounded by whitespace.

parseKeyValuePairs(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

To support both the old and new slurm output format, we must be able to parse the following: [whitepace*]key[whitespace*]=[whitepace*]value[whitepace*] and so on.

parseKeyValueRecords(String, String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Parses multiple key value records.

parseList(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Parses a list of strings, separated by whitespace (including newlines) Trailing empty strings are not included.

parseQueueInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

Parses queue info from "qstat -g c -xml"

parser - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

parser - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

parseSizeValue(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

parseStatsFile(String[], int, HashMap<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseSubmitOutput(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

parseTable(String, String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

Parses lines containing multiple values.

parseXenonID(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

password - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider

password - Variable in class nl.esciencecenter.xenon.credentials.PasswordCredential

Must be char array for security!! (Strings end up in the constant pool, etc.)

PasswordCredential - Class in nl.esciencecenter.xenon.credentials

A Credential consisting of a username + password combination.

PasswordCredential(String, char[]) - Constructor for class nl.esciencecenter.xenon.credentials.PasswordCredential

Create a new PasswordCredential using a char array as password.

PasswordCredential(String, String) - Constructor for class nl.esciencecenter.xenon.credentials.PasswordCredential

Create a new PasswordCredential using a String as password.

PasswordProvider(char[]) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider

path - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The path these attributes belong to

Path - Class in nl.esciencecenter.xenon.filesystems

Path contains a sequence of path elements separated by a separator.

Path() - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new empty Path using the default separator.

Path(boolean, String...) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path using the given path elements and the default separator.

Path(boolean, List<String>) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path using the given path elements and the default separator.

Path(char, boolean, String...) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path using the given path elements and the provided separator.

Path(char, boolean, List<String>) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path using the given path separator, absoluteness, and elements.

Path(char, String) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path by parsing path using the provided separator.

Path(String) - Constructor for class nl.esciencecenter.xenon.filesystems.Path

Create a new Path by parsing path using the default separator.

PATH_ELEMENT_LENGTH - Static variable in class nl.esciencecenter.xenon.filesystems.Path

Estimate of path element String length.

Path.PathIterator - Class in nl.esciencecenter.xenon.filesystems

PathAlreadyExistsException - Exception in nl.esciencecenter.xenon.filesystems

Signals that a path already exists.

PathAlreadyExistsException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException

PathAlreadyExistsException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException

PathAttributes - Interface in nl.esciencecenter.xenon.filesystems

FileAttributes represents a set of attributes of a path.

PathAttributesImplementation - Class in nl.esciencecenter.xenon.adaptors.filesystems

FileAttributes represents a set of attributes of a path.

PathAttributesImplementation() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

PathIterator() - Constructor for class nl.esciencecenter.xenon.filesystems.Path.PathIterator

PE_SLOTS - nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

PENDING_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

PENDING_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

These are the states a job can be in when it is pending: PENDING: the job is awaiting resource allocation.

pendingCopies - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

PendingCopy(Future<Void>, FileSystem.CopyCallback) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy

performCopy(Path, FileSystem, Path, CopyMode, boolean, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Perform a (possibly) recursive copy from a path on this filesystem to a path on destinationFS.

PERMISSION_TYPES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

PermissionDeniedException - Exception in nl.esciencecenter.xenon.adaptors.filesystems

Signals that the user does not have sufficient permissions to perform the operation.

PermissionDeniedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException

PermissionDeniedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException

permissions - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The permissions of this file (POSIX only)

permissionsToBits(Set<PosixFilePermission>) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

Polling delay for jobs started by this adaptor.

POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

Polling delay for jobs started by this adaptor.

POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

Polling delay for jobs started by this adaptor.

POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

Polling delay for jobs started by this adaptor.

pollDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Polling delay in ms.

POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Property for maximum history length for finished jobs

POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Property for maximum history length for finished jobs

pollingDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

pollingDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

pool - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

popEmpties() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

PosixFilePermission - Enum in nl.esciencecenter.xenon.filesystems

PosixFilePermission is an enumeration containing all supported Posix file permissions.

PosixFilePermission() - Constructor for enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

PosixFileUtils - Class in nl.esciencecenter.xenon.adaptors.filesystems

PosixFileUtils contains several utility functions related to Posix files.

PosixFileUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

ppn - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

All our own properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

Local properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

All our own properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

All our own properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

The prefix used by all properties related to this adaptor

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

The prefix used by all properties related to this adaptor

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Local properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

The prefix used by all properties related to this adaptor

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

All our own properties start with this prefix.

PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

The prefix used by all properties related to this adaptor

printProperties(PrintStream, String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Prints properties (including default properties) to a stream.

process - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

process - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

Process - Interface in nl.esciencecenter.xenon.adaptors.schedulers

processPath(Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

processPath(Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

properties - Variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

The properties that are actually set.

properties - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

properties - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler

propertyDescriptions - Variable in class nl.esciencecenter.xenon.adaptors.XenonProperties

Contains a description of all properties this XenonProperties should accept, including their type, default, etc.

propertySet(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Check if the property with the given name is set.

PropertyTypeException - Exception in nl.esciencecenter.xenon

Signals that a property has a different type than the get method it was retrieved with.

PropertyTypeException(String, String) - Constructor for exception nl.esciencecenter.xenon.PropertyTypeException

PropertyTypeException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.PropertyTypeException

protectAgainstShellMetas(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Escapes and quotes command line arguments to keep shells from expanding/interpreting them.

put(String, UserCredential) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap

Add a Credential to the CredentialMap using key as a unique key.

Q

QACCT_HEADER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

qconfPeDetailsArguments(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

generate arguments to list details of all parallel environments given

QNAMES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

queryQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

queryQueues(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

QUEUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

Local queue properties start with this prefix.

QUEUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

All our own queue properties start with this prefix.

QUEUE_INFO_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

QueueInfo - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine

Class that holds some info on queues used in Grid Engine.

QueueInfo(String, int, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

Testing constructor

QueueInfo(Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

queueName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

queueName - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The queue to submit to.

queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

queues - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup

queues - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

QueueStatus - Interface in nl.esciencecenter.xenon.schedulers

QueueStatus contains status information for a specific queue.

QueueStatusImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers

QueueStatus contains status information for a specific queue.

QueueStatusImplementation(Scheduler, String, XenonException, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Create a Queue status.

R

read() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

read(byte[]) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

read(byte[], int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

READ_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

read by group

READ_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

read by others

READ_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

read by owner

readable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is the file readable ?

readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

readFromFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Open an existing file and return an InputStream to read from this file.

readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Reads the target of a symbolic link (optional operation).

RecursiveListIterator - Class in nl.esciencecenter.xenon.adaptors.filesystems

RecursiveListIterator(Function<Path, Iterator<PathAttributes>>, Path) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

recursiveMapFromElement(Node, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

Create a Map from the tag names and text values of child nodes.

relativize(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path

Create a relative Path between the given Path and this Path.

RemoteCommandRunner - Class in nl.esciencecenter.xenon.adaptors.schedulers

Runs a command.

RemoteCommandRunner(Scheduler, String, String, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

Run a command remotely, and save stdout, stderr, and exit code for later processing.

remove() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator

rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

rename(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Rename an existing source path to a non-existing target path (optional operation).

REPLACE - nl.esciencecenter.xenon.filesystems.CopyMode

If the source and destination are a regular file, the destination file will be replaced.

reset() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

resolve(String) - Method in class nl.esciencecenter.xenon.filesystems.Path

Resolve a Path represented as a String against this path.

resolve(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path

Resolve a Path against this Path.

resolveSibling(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path

Resolves the given Path to this paths parent Path, thereby creating a sibling to this Path.

root - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

ROUND_ROBIN - nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

run() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter

run() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

run() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

run() - Method in class nl.esciencecenter.xenon.utils.InputWriter

Entry point for the Daemon thread.

run() - Method in class nl.esciencecenter.xenon.utils.OutputReader

Entry method for daemon thread.

run() - Method in class nl.esciencecenter.xenon.utils.StreamForwarder

Main entry method for the daemon thread.

runCheckedCommand(String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Run a command until completion.

runCommand(String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Run a command on the remote scheduler machine.

running - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

RUNNING_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

RUNNING_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

These are the states a job can be in when it is running: CONFIGURING: the resources are available and being preparing to run the job (for example by booting).

S

scheduler - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

Scheduler - Class in nl.esciencecenter.xenon.schedulers

Scheduler represents a (possibly remote) scheduler that can be used to submit jobs and retrieve queue information.

Scheduler(String, String, String, Credential, XenonProperties) - Constructor for class nl.esciencecenter.xenon.schedulers.Scheduler

SchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers

SchedulerAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

SchedulerAdaptorDescription - Interface in nl.esciencecenter.xenon.schedulers

schedulerAdaptors - Static variable in class nl.esciencecenter.xenon.adaptors.AdaptorLoader

schedulerArguments - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The arguments to pass to the scheduler.

SchedulerClosedException - Exception in nl.esciencecenter.xenon.adaptors.schedulers

Signals that a unknown Copy handle was provided.

SchedulerClosedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException

SchedulerClosedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException

schedulerSpecificInformation - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

schedulerSpecificInformation - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

ScriptingParser - Class in nl.esciencecenter.xenon.adaptors.schedulers

ScriptingParser() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

ScriptingParser.TokenStream - Class in nl.esciencecenter.xenon.adaptors.schedulers

ScriptingScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers

Connection to a (remote) scheduler, implemented by calling command line commands over a local or ssh connection.

ScriptingScheduler(String, String, String, Credential, Map<String, String>, XenonPropertyDescription[], String) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

ScriptingSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers

ScriptingSchedulerAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingSchedulerAdaptor

ScriptingUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers

ScriptingUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

separator - Variable in class nl.esciencecenter.xenon.filesystems.Path

The separator used in this path

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.NotConnectedException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidPathException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.NoSuchPathException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidCredentialException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidLocationException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidPropertyException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.PropertyTypeException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.NoSuchJobException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnknownAdaptorException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnknownPropertyException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnsupportedOperationException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.XenonException

serialVersionUID - Static variable in exception nl.esciencecenter.xenon.XenonRuntimeException

server - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

server - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

session - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

session - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

sessions - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

setArguments(String...) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the command line arguments of the executable.

setArguments(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

This method should not be used.

setCoresPerTask(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the number of cores needed for each task.

setCreationTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setDirectory(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setEnvironment(Map<String, String>) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the environment of the executable.

setExecutable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setExecutable(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the path to the executable.

setFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter

setFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader

setGroup(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setHidden(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setJavaArguments(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Sets the arguments of the java main class.

setJavaClasspath(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Sets the java class path.

setJavaMain(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Sets the main class.

setJavaOptions(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Sets the JVM options.

setJavaSystemProperties(Map<String, String>) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

Sets the system properties.

setLastAccessTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setLastModifiedTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setMaxMemory(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the amount of memory needed for process (in MBytes).

setMaxRuntime(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the maximum job duration in minutes.

setName(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the name of the job.

setOther(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setOwner(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Sets the POSIX permissions of a path (optional operation).

setQueueName(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the queue name;

setReadable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setRegular(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setSchedulerArguments(String...) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the scheduler specific arguments for this job.

setSession(ClientSession) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

setSize(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setStartPerJob() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set if the executable must be started for once per job instead of for each task.

setStartPerTask() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set if the executable must be started for each task instead of once per job.

setStartTime(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the start time of the job.

setStderr(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the path to the file to which the executable must redirect stderr.

setStdin(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the path to the file from which the executable must redirect stdin.

setStdout(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the path to the file to which the executable must redirect stdout.

setStreams(Streams) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

setSymbolicLink(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

setTasks(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the number of tasks in this job.

setTasksPerNode(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the number of tasks allowed per node.

setTempSpace(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Set the amount of memory needed for process (in MBytes).

setup - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

setupInfo - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

setWorkingDirectory(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

Sets the path of the working directory for the executable.

setWorkingDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Set the current working directory of this file system to directory.

setWritable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

sftpExceptionToXenonException(IOException, String) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

SftpFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.sftp

SftpFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

SftpFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.sftp

SftpFileSystem(String, String, String, Credential, Path, int, SSHConnection, SftpClient, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

SGE62_SCHEMA_ATTRIBUTE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

SGE62_SCHEMA_VALUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

SINGLE_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

singleExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

singleQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

size - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

The size of this file

SIZE - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type SIZE can be converted into a 64-bit signed long using Long.valueOf(String).

skip(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

sleep(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Sleep for a certain amount of time, provide the job is not done, and no one requested an update.

sleep(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

slots - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

slots - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

SLURM_UPDATE_SLEEP - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

SLURM_UPDATE_TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

SlurmScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm

Interface to the GridEngine command line tools.

SlurmScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

SlurmSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm

Adaptor for Slurm scheduler.

SlurmSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

SlurmSetup - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm

SlurmSetup(Map<String, String>, boolean) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

SlurmUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm

SlurmUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

socket - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

SONOFSGE819_SCHEMA_VALUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser

source - Variable in class nl.esciencecenter.xenon.utils.OutputReader

SSH_CONFIG_FILE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

OpenSSH config filename.

SSH_CONFIG_FILE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

OpenSSH config filename.

SSHConnection - Class in nl.esciencecenter.xenon.adaptors.shared.ssh

SSHConnection(SshClient, int) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

SshInteractiveProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh

LocalBatchProcess implements a InteractiveProcess for local batch processes.

SshInteractiveProcess(ClientSession, JobDescription, String, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

SshInteractiveProcessFactory - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh

SshInteractiveProcessFactory(SSHConnection) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory

SshSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh

SshSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

SSHUtil - Class in nl.esciencecenter.xenon.adaptors.shared.ssh

SSHUtil() - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

This constructor is only needed for testing.

SSHUtil.PasswordProvider - Class in nl.esciencecenter.xenon.adaptors.shared.ssh

SSHUtil.Tunnel - Class in nl.esciencecenter.xenon.adaptors.shared.ssh

stack - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator

start(long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

started - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback

startInteractiveCommand(String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Start an interactive command on the remote machine (usually via ssh).

startPerTask - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

Start the executable once per task instead of once per job?

startsWith(String) - Method in class nl.esciencecenter.xenon.filesystems.Path

Tests if this Path starts with the given Path represented as a String.

startsWith(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path

Tests if this Path starts with the given Path.

startsWithLinuxRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Checks if the provide path starts with a valid Linux root, that is "/".

startTime - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The requested start time

startupTimeout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

startupTimeout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

startWithRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Checks if the provide path starts with a valid root, such as "/" or "C:".

startWithWindowsRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils

Checks if the provide path starts with a valid Windows root, for example "C:".

stat(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

state - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

state - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

state - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

STATS_FILE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

stderr - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

stderr - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The location file which to redirect stderr to.

stderrForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

stdin - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

stdin - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The location file from which to redirect stdin.

stdinForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

stdout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

stdout - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The location file which to redirect stdout to.

stdoutForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

streamCopy(InputStream, OutputStream, int, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Copy data from in to out using a buffer size of buffersize.

StreamForwarder - Class in nl.esciencecenter.xenon.utils

A simple stream forwarder that uses a daemon thread to read from an InputStream and write it to a OutputStream.

StreamForwarder(InputStream, OutputStream) - Constructor for class nl.esciencecenter.xenon.utils.StreamForwarder

Create a new StreamForwarder and start it immediately.

StreamForwarder(String, InputStream, OutputStream, int) - Constructor for class nl.esciencecenter.xenon.utils.StreamForwarder

Create a new StreamForwarder and start it immediately.

streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess

streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess

Streams - Interface in nl.esciencecenter.xenon.schedulers

Streams is a container for the standard input, output and error streams of a job.

StreamsImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers

Streams is a container for the standard input, output and error streams of a job.

StreamsImplementation(String, InputStream, OutputStream, InputStream) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation

Create a Streams containing the job and its standard streams.

StreamToFileWriter(String, InputStream) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter

STRICT_HOST_KEY_CHECKING - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

Enable strict host key checking.

STRICT_HOST_KEY_CHECKING - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Enable strict host key checking.

STRING - nl.esciencecenter.xenon.XenonPropertyDescription.Type

Properties of type STRING are directly stored in a String without conversion.

subFileSystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

submit(JobDescription, boolean) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Submit a batch job.

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Submit an interactive job (optional operation).

SUBMITTED - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

How many jobs have been submitted locally.

SUBMITTED - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

How many jobs have been submitted using this adaptor.

subpath(int, int) - Method in class nl.esciencecenter.xenon.filesystems.Path

Returns a Path that is a subsequence of the name elements of this path.

subScheduler - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

substituteJobID(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

substituteJobID(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

substituteJobID(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

substituteJobID(String, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

success() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

successIgnoreError() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

SUPPORTED_VERSIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

supportedLocations - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor

supportedProperties - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor

supportsBatch() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

supportsBatch() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription

Does this Scheduler support the submission of batch jobs ? For batch jobs the standard streams of the jobs are redirected from and to files.

supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

supportsInteractive() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription

Does this Scheduler supports the submission of interactive jobs ? For interactive jobs the standard streams of the job must be handled by the submitting process.

supportsProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Check if this XenonProperties supports a property with the given name.

supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

supportsReadingPosixPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

supportsRename() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

supportsRename() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

supportsSettingPosixPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

supportsThirdPartyCopy() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor

supportsThirdPartyCopy() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription

Does this adaptor support third party copy ? In third party copy, a file is copied between two remote locations, without passing through the local machine first.

T

tasks - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The number of tasks the jobs consists of.

tasksPerNode - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The number of tasks per node

tempSpace - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The tempspace needed (in MB) on each node/process.

terminate(long) - Method in class nl.esciencecenter.xenon.utils.StreamForwarder

Wait for a given timeout for the StreamForwarder to terminate by reading an end-of-stream on the input.

TERMINATION_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess

Time to wait for a StreamForwarder to terminate (in ms.)

TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

Add gateway to access machine.

TIMESTAMP_COMMAND - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

toAbsolutePath() - Method in class nl.esciencecenter.xenon.filesystems.Path

toAbsolutePath(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Convert the provided path to an absolute path by (if necessary) resolving a relative path against the working directory of this FileSystem.

TokenStream(String) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser.TokenStream

toMap() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

Returns all properties that are set in a new Map.

toRelativePath() - Method in class nl.esciencecenter.xenon.filesystems.Path

TorqueScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque

Interface to the TORQUE command line tools.

TorqueScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

TorqueSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque

Adaptor for TORQUE batch system.

TorqueSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

TorqueUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque

Generator for GridEngine job script.

TorqueUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

TorqueXmlParser - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque

Parses xml output from TORQUE batch system.

TorqueXmlParser() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser

toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo

toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo

toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation

toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation

toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner

toString() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties

toString() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential

toString() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential

toString() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

toString() - Method in class nl.esciencecenter.xenon.filesystems.Path

toString() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription

toString() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription

toString() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription

TransferClientInputStream - Class in nl.esciencecenter.xenon.adaptors.filesystems

Wraps an InputStream instance.

TransferClientInputStream(InputStream, Closeable) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientInputStream

TransferClientOutputStream - Class in nl.esciencecenter.xenon.adaptors.filesystems

Wraps an OutputStream instance.

TransferClientOutputStream(OutputStream, Closeable) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

translateError(RemoteCommandRunner, String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

translateError(RemoteCommandRunner, String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler

translateProperties(Map<String, String>, String, XenonPropertyDescription[], String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

triggerStatusUpdate() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Signal the polling thread to produce a status update.

Tunnel(ServerSocket, ChannelDirectTcpip, int) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel

tunnels - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection

type - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription

Type() - Constructor for enum nl.esciencecenter.xenon.XenonPropertyDescription.Type

U

uniqueID - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

uniqueID - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler

uniqueIDBase - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtScheduler

UnknownAdaptorException - Exception in nl.esciencecenter.xenon

Thrown when an unknown adaptor name is provided.

UnknownAdaptorException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnknownAdaptorException

UnknownAdaptorException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnknownAdaptorException

UnknownPropertyException - Exception in nl.esciencecenter.xenon

Signals that a property has a different type than the get method it was retrieved with.

UnknownPropertyException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnknownPropertyException

UnknownPropertyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnknownPropertyException

UNLIMITED_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

unlimitedExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

unlimitedQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

UnsupportedJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers

Signals that a combination of options used in a JobDescription is not supported by a resource.

UnsupportedJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException

UnsupportedJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException

UnsupportedOperationException - Exception in nl.esciencecenter.xenon

Throw when an unsupported optional operation is called.

UnsupportedOperationException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnsupportedOperationException

UnsupportedOperationException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnsupportedOperationException

updateRecentlySeen(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

updateRecentlySeen(Set<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobSeenMap

updateSignal - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

updateState(String, int, XenonException) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

url - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter

USER_TYPES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

UserCredential - Interface in nl.esciencecenter.xenon.credentials

username - Variable in class nl.esciencecenter.xenon.credentials.DefaultCredential

username - Variable in class nl.esciencecenter.xenon.credentials.KeytabCredential

username - Variable in class nl.esciencecenter.xenon.credentials.PasswordCredential

The user name associated with the credential.

usesFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor

usesFileSystem() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription

Does this Scheduler create a FileSystem to support the submission of jobs ? Many scheduler implementations use a FileSystem internally to handle job submission, for example to store submission scripts or handle the standard I/O streams of a process.

V

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

List of properties supported by this FTP adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor

List of properties supported by this FTP adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor

List of properties supported by this SSH adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

List of properties supported by this FTP adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtSchedulerAdaptor

List of all properties supported by this adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor

List of all properties supported by this adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor

The properties supported by this adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor

List of all properties supported by this adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor

List of properties supported by this SSH adaptor

VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor

List of all properties supported by this adaptor

validateHost(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

Weak validation of a host string containing either a hostame of IP adres.

validProperties(XenonPropertyDescription[]) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

valueOf(String) - Static method in enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum nl.esciencecenter.xenon.filesystems.CopyMode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum nl.esciencecenter.xenon.XenonPropertyDescription.Type

Returns the enum constant of this type with the specified name.

values() - Static method in enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum nl.esciencecenter.xenon.filesystems.CopyMode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum nl.esciencecenter.xenon.XenonPropertyDescription.Type

Returns an array containing the constants of this enum type, in the order they are declared.

verifyJobDescription(JobDescription, boolean) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

verifyJobDescription(JobDescription, String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.at.AtUtils

verifyJobDescription(JobDescription, String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils

verifyJobDescription(JobDescription, String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils

verifyJobDescription(JobDescription, String[], boolean) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils

verifyJobDescription(JobDescription, String[], String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Do some checks on a job description.

verifyJobInfo(Map<String, String>, String, String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Check if the info map for a job exists, contains the expected job ID, and contains the given additional fields

verifyLoginSuccess(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

verifyStartTime(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils

Verify a String containing a start time.

version - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

version() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup

VIA_TAG - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

W

waitForStatusUpdate(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

Wait for a certain amount of time for an update.

waitUntilDone(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Wait until a Job is done, or until the give timeout expires (whichever comes first).

waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Wait until a copy operation is done or until a timeout expires.

waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Wait until a job is done or until a timeout expires.

waitUntilFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter

Wait until the InputWriter has finished writing.

waitUntilFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader

Waits until the OutputReader has finished (i.e., has reached the end-of-stream on the input).

waitUntilRunning(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler

Wait until a Job is running (or already done), or until the given timeout expires, whichever comes first.

waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler

Wait until a job starts running, or until a timeout expires.

WebdavFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav

WebdavFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor

WebdavFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav

WebdavFileSystem(String, String, String, Credential, String, Path, int, Sardine, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

WebdavFileSystem.StreamToFileWriter - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav

WHITESPACE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

workingDirectory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor

workingDirectory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler

workingDirectory - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem

workingDirectory - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription

The working directory for the job.

writable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation

Is the file writable ?

write(byte[]) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

write(byte[], int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

write(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.TransferClientOutputStream

WRITE_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

write by group

WRITE_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

write by others

WRITE_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils

write by owner

writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

writeToFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Open a file and return an OutputStream to write to this file.

writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem

writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem

writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem

writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem

Open a file and return an OutputStream to write to this file.

X

XenonException - Exception in nl.esciencecenter.xenon

XenonException is the parent exception for all exceptions raised in Xenon.

XenonException(String, String) - Constructor for exception nl.esciencecenter.xenon.XenonException

XenonException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.XenonException

xenonPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem

XenonProperties - Class in nl.esciencecenter.xenon.adaptors

Read-only properties implementation.

XenonProperties() - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties

Creates an empty XenonProperties.

XenonProperties(Map<String, XenonPropertyDescription>, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties

Private constructor for XenonProperties using in copying and filtering.

XenonProperties(XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties

Create a new XenonProperties that will support the properties in supportedProperties.

XenonPropertyDescription - Class in nl.esciencecenter.xenon

XenonPropertyDescription contains all necessary information about a property that is recognized by Xenon

XenonPropertyDescription(String, XenonPropertyDescription.Type, String, String) - Constructor for class nl.esciencecenter.xenon.XenonPropertyDescription

XenonPropertyDescription.Type - Enum in nl.esciencecenter.xenon

This Type enumeration lists all possible types of properties recognized by Xenon.

XenonRuntimeException - Exception in nl.esciencecenter.xenon

XenonRuntimeException is the parent for all runtime exceptions raised in Xenon.

XenonRuntimeException(String, String) - Constructor for exception nl.esciencecenter.xenon.XenonRuntimeException

XenonRuntimeException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.XenonRuntimeException

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