Index (xenon-2.3.0 2.6.2 API for Xenon developers)

A B C D E F G H I J K L M N O P Q R S T U V W X

A

ACCOUNTING_GRACE_TIME_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: Timeout for waiting for the accounting info of a job to appear
ACCOUNTING_GRACE_TIME_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: Timeout for waiting for the accounting info of a job to appear
accountingAvailable - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
accountingAvailable() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
accountingGraceTime - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
accountingGraceTime - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
Adaptor - Class in nl.esciencecenter.xenon.adaptors
Adaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.Adaptor
adaptor - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
adaptor - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
adaptor - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: Description of the adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: Human readable description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Description of the adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: Human readable description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: A description of this adaptor
ADAPTOR_DESCRIPTION - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: Human readable description of this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: The locations supported by the adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: The locations supported by the adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: The locations supported by this adaptor
ADAPTOR_LOCATIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: The locations supported by this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: Name of the local adaptor is defined in the engine.
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Name of the local adaptor is defined in the engine.
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: The name of this adaptor
ADAPTOR_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: The name of this adaptor
AdaptorDescription - Interface in nl.esciencecenter.xenon: AdaptorStatus contains information on a specific adaptor.
adaptorName - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
adaptorName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
adaptorName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
adaptorName - Variable in exception nl.esciencecenter.xenon.XenonException
adaptorName - Variable in exception nl.esciencecenter.xenon.XenonRuntimeException
adaptors - Static variable in class nl.esciencecenter.xenon.filesystems.FileSystem
adaptors - Static variable in class nl.esciencecenter.xenon.schedulers.Scheduler
ADAPTORS_PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
ADAPTORS_PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
addAdaptor(FileAdaptor) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem
addAdaptor(SchedulerAdaptor) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler
addArgument(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Add a command line argument for the executable.
addBytesCopied(long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
addDeletedJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
addDeletedJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
addEnvironment(String, String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Add a variable to the environment of the executable.
addHop(int, ClientSession, SSHUtil.Tunnel) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
addJavaArgument(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription
addJavaClasspathElement(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription
addJavaOption(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Adds a JVM option.
addJavaSystemProperty(String, String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Adds a system property to the current set of system properties.
addJobOption(String, String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Add a job option to the job.
addProperties(Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Adds the specified properties to the current ones and checks if their names and types are correct.
addSchedulerArgument(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Add a scheduler specific argument.
addToBuffer(byte[], int) - Method in class nl.esciencecenter.xenon.utils.OutputReader
AGENT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Enable the use of an ssh-agent
AGENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Enable the use of an ssh-agent
AGENT_FORWARDING - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Enable the use of ssh-agent-forwarding
AGENT_FORWARDING - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Enable the use of ssh-agent-forwarding
ALLOCATION_FILL_UP - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
ALLOCATION_PE_SLOTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
ALLOCATION_ROUND_ROBIN - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
allocationRule - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
AllocationRule() - Constructor for enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
appendToFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Open an existing file and return an OutputStream to append data to this file.
areSamePaths(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
arguments - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The arguments to pass to the executable.
asCSList(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.CommandLineUtils: Create a single comma separated string out of a list of strings.
assertDirectoryExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertFileExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertFileIsSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertIsOpen() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertNonNullOrEmpty(String, String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler
assertNotNull(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertParentDirectoryExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPathExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPathIsDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPathIsFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPathIsNotDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPathNotExists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
assertPositive(long, String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler
AttributeNotSupportedException - Exception in nl.esciencecenter.xenon.filesystems: Signals that a requested file attribute is not supported by the underlying file system implementation.
AttributeNotSupportedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException
AttributeNotSupportedException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException
AUTOMATICALLY_ADD_HOST_KEY - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Enable strict host key checking.
AUTOMATICALLY_ADD_HOST_KEY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Enable strict host key checking.
available() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream

B

BadParameterException - Exception in nl.esciencecenter.xenon.adaptors.schedulers: Signals that a parameter has an invalid value.
BadParameterException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException
BadParameterException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException
BAR_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
BatchProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers: BatchProcess wraps an InteractiveProcess to emulate a batch process.
BatchProcess(FileSystem, Path, JobDescription, String, InteractiveProcessFactory, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
bitsToPermissions(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
bucket - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
buffer - Variable in class nl.esciencecenter.xenon.utils.OutputReader
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: The buffer size to use when copying data.
BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.utils.OutputReader
bufferSize - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
bufferSize - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
bufferSize - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder
buildCommand(JobDescription) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
bytesCopied() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Get the number of bytes that have been copied.
bytesCopied - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
bytesCopied - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
bytesCopied() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
bytesToCopy() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Get the number of bytes that need to be copied for the entire copy operation.
bytesToCopy - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
bytesToCopy - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
bytesToCopy() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation

C

calculateSlots(String, String, int) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
callback - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy
canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
canAppend() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
canAppend() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
cancel(String) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Cancel a copy operation.
cancel() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
cancelJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
cancelJob(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Cancel a job.
cancelled - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
canCreateSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
canCreateSymboliclinks() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription: Can this adaptor create symbolic links ? In third party copy, a file is copied between two remote locations, without passing through the local machine first.
canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
canReadSymboliclinks() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
canReadSymboliclinks() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription: Can this adaptor read symbolic links ?
certfile - Variable in class nl.esciencecenter.xenon.credentials.CertificateCredential: This member variables holds the URI of the file containing the certificate.
CertificateCredential - Class in nl.esciencecenter.xenon.credentials: A container for security Information based upon certificates.
CertificateCredential(String, String, char[]) - Constructor for class nl.esciencecenter.xenon.credentials.CertificateCredential: Constructs a CertificateCredential out of a username, a certificate file containing a private key, and an optional passphrase.
CertificateNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.shared.ssh: Signals that a certificate file could not be found.
CertificateNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException
CertificateNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException
channel - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
channel - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
checkClientReply(FTPClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
checkClientReply(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
checkClosed() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
checkClosed() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
checkForNullAndSeparator(char, List<String>) - Static method in class nl.esciencecenter.xenon.filesystems.Path
checkIfContains(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Checks if the given text contains any of the given options.
checkQueue(String[], String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Check if the given queueName is presents in queueNames.
checkQueueNames(String[]) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Checks if the queue names given are valid, and throw an exception otherwise.
checkType(XenonPropertyDescription, String, String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
checkVersion(Document) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
checkVersion() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
checkWorkingDirectory(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Check if the given working directory exists.
cleanup() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
cleanupJob(List<JobExecutor>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
cleanupJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
cleanValue(String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Remove suffix from a string if present.
clear(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns a copy of this XenonProperties that contains all properties but clears the properties that start with the given prefix.
clearUpdateRequest() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Clear the update signal and wake up any waiting threads
client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
client - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
close() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
close() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory
close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory
close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
close() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory
close() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
close() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
close() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Close this FileSystem.
close() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Close this Scheduler.
close(Closeable, String) - Method in class nl.esciencecenter.xenon.utils.StreamForwarder: Closes the input stream, thereby stopping the stream forwarder, and closing the output stream.
closed - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
closed - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
closeServer() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
closeStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
CommandLineUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers: Some simple utilities for handling and creating scripts and command lines.
CommandLineUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.CommandLineUtils
CommandNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.schedulers.local: Signals that a command could not be found.
CommandNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException
CommandNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException
CommandRunner - Class in nl.esciencecenter.xenon.adaptors.schedulers.local: Runs a command.
CommandRunner(String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
CommandRunner(String, File, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
completedPendingFtpCommand - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
completedPendingFtpCommand - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
COMPONENT_NAME - Static variable in class nl.esciencecenter.xenon.filesystems.FileSystem: The name of this component, for use in exceptions
COMPONENT_NAME - Static variable in class nl.esciencecenter.xenon.schedulers.Scheduler: The name of this component, for use in exceptions
concat(String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.CommandLineUtils: Concatinate a series of Strings using a StringBuilder.
connect(String, Credential) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
connect(String, SshClient, String, Credential, int, long) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: Connect an existing SshClient to the server at location and authenticate using the given credential.
connectAndAuthenticate(String, SshClient, String, int, UserCredential, long) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
connection - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
connection - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory
CONNECTION_TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Property for maximum history length for finished jobs
ConnectionLostException - Exception in nl.esciencecenter.xenon.adaptors.filesystems: Signals that a connection was lost.
ConnectionLostException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException
ConnectionLostException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException
connectToServer(String, int, FTPClient) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
contains(PosixFilePermission, PosixFilePermission...) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission: Check if a sequence of PosixFilePermissions contains a specific option.
containsAny(String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Returns if the given input String contains any of the option Strings given.
containsCredential(String) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap: Check if the key is stored in this CredentialMap.
content - Variable in class nl.esciencecenter.xenon.utils.InputWriter
context - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
convertAttributes(Path, FTPFile) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
convertAttributes(Path, SftpClient.Attributes) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
convertTime(FileTime) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
copy(Path, FileSystem, Path, CopyMode, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Asynchronously Copy an existing source path to a target path on a different file system.
CopyCallback() - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
CopyCancelledException - Exception in nl.esciencecenter.xenon.filesystems
CopyCancelledException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.CopyCancelledException
copyFile(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Copy a single file to another file system.
copyIdentifier - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
CopyMode - Enum in nl.esciencecenter.xenon.filesystems: CopyOption is an enumeration containing all possible options for copying a file.
CopyMode() - Constructor for enum nl.esciencecenter.xenon.filesystems.CopyMode
copyRecursive(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
CopyStatus - Interface in nl.esciencecenter.xenon.filesystems: CopyStatus contains status information for a specific copy operation.
CopyStatusImplementation(String, String, long, long, XenonException) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
copySymbolicLink(Path, FileSystem, Path, CopyMode, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Copy a symbolic link to another file system (optional operation).
create(String, String, Credential, Map<String, String>) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Create a new FileSystem using the adaptor that connects to a data store at location using the credentials to get access.
create(String, String, Credential) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Create a new FileSystem using the adaptor that connects to a data store at location using the credentials to get access.
create(String, String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Create a new FileSystem using the adaptor that connects to a data store at location using the default credentials to get access.
create(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Create a new FileSystem using the adaptor that connects to a data store at the default location using the default credentials to get access.
create(String, String, Credential, Map<String, String>) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Create a new Scheduler using the adaptor connecting to the location using credentials to get access.
create(String, String, Credential) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Create a new Scheduler using the adaptor connecting to the location using credentials to get access.
create(String, String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Create a new Scheduler using the adaptor connecting to the location using the default credentials to get access.
create(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Create a new Scheduler using the adaptor connecting to the default location and using the default credentials to get access.
createDirectories(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Creates a new directory, failing if the directory already exists.
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
createDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Creates a new directory, failing if the directory already exists.
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
createFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
createFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Creates a new empty file, failing if the file already exists.
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
createFileSystem(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
createInteractiveProcess(JobDescription, String, String, long) - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory
createInteractiveProcess(JobDescription, String, String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory
createInteractiveProcess(JobDescription, String, String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory
createOutputStream(FileSystem, Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
createScheduler(String, Credential, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor
createSftpClient() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
createSSHClient() - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: Create a new SshClient with a default configuration similar to a stand-alone SSH client.
createSSHClient(boolean, boolean, boolean, boolean, boolean) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: Create a new SshClient with the desired configuration.
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
createSymbolicLink(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Creates a new symbolic link, failing if the link already exists (optional operation).
creationTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The creation time of this file
credential - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
Credential - Interface in nl.esciencecenter.xenon.credentials: Credential represents a user credential uses to gain access to a resource.
credential - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
credential - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler
CredentialMap - Class in nl.esciencecenter.xenon.credentials: A Credential consisting of a collection of Credentials each uniquely identified by a String (typically a host name or host alias).
CredentialMap() - Constructor for class nl.esciencecenter.xenon.credentials.CredentialMap: Create a new CredentialMap using null as the default credential.
CredentialMap(UserCredential) - Constructor for class nl.esciencecenter.xenon.credentials.CredentialMap: Creates a new CredentialMap and set the default credential to defaultCredential.
CredentialNotFoundException - Exception in nl.esciencecenter.xenon.adaptors.shared.ssh: Signals that a credential could not be found.
CredentialNotFoundException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException
CredentialNotFoundException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException
curIterator - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
curPageSet - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
currentID - Static variable in class nl.esciencecenter.xenon.adaptors.Adaptor

D

DaemonThreadFactory() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler.DaemonThreadFactory
Deadline - Class in nl.esciencecenter.xenon.adaptors.schedulers
Deadline() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.Deadline: No need to use this constructor, use static methods instead.
DEFAULT_BUFFER_SIZE - Static variable in class nl.esciencecenter.xenon.utils.StreamForwarder
DEFAULT_MAX_RUN_TIME_IN_MINUTES - Static variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The default maximum run time
DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: The default SSH port
DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: The default SSH port
DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: The default SSH port
DEFAULT_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: The default SSH port
DEFAULT_SEPARATOR - Static variable in class nl.esciencecenter.xenon.filesystems.Path: The default separator to use.
DEFAULT_SSH_PORT - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
defaultCredential - Variable in class nl.esciencecenter.xenon.credentials.CredentialMap
DefaultCredential - Class in nl.esciencecenter.xenon.credentials: This class represents the default credential that may be used by the various adaptors.
DefaultCredential() - Constructor for class nl.esciencecenter.xenon.credentials.DefaultCredential
DefaultCredential(String) - Constructor for class nl.esciencecenter.xenon.credentials.DefaultCredential
defaultQueueName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
defaultValue - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription
delete(Path, boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
delete(Path, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Deletes an existing path.
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
deleteDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Delete an empty directory.
deletedJobs - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
deletedJobs - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
deleteFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Delete a file.
deleteLocal(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
description - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor
description - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
description - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription
destination - Variable in class nl.esciencecenter.xenon.utils.InputWriter
destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess: Destroy (stop) process.
destroy() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process
destroy() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
DirectoryNotEmptyException - Exception in nl.esciencecenter.xenon.filesystems: Signals that directory is not empty.
DirectoryNotEmptyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException
DirectoryNotEmptyException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException
dirExists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
DISABLE_ACCOUNTING_USAGE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: Should the accounting usage be disabled?
documentBuilder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
documentBuilder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser
done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
done - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
done - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder
done() - Method in class nl.esciencecenter.xenon.utils.StreamForwarder: Tell the daemon thread that we are done.
DONE_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
DONE_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: In completed state, the job has terminated and all processes have returned exit code 0.

E

elements - Variable in class nl.esciencecenter.xenon.filesystems.Path: The path elements in this path
emptyMap(int) - Static method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Creates empty mutable Map with sufficient initial capacity.
end() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
EndOfFileException - Exception in nl.esciencecenter.xenon.adaptors.filesystems: Signals that an end-of-file was encountered.
EndOfFileException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException
EndOfFileException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException
endsWith(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path: Tests if this Path ends with the given Path.
endsWith(String) - Method in class nl.esciencecenter.xenon.filesystems.Path: Tests if this Path ends with the given Path represented as a String.
ensureDirectoryExists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
environment - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The environment variables and their values
equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
equals(Object) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
equals(Object) - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential
equals(Object) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap
equals(Object) - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential
equals(Object) - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential
equals(Object) - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential
equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
equals(Object) - Method in class nl.esciencecenter.xenon.filesystems.Path
equals(Object) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription
equals(Object) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler
equals(Object) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription
EQUALS_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
err - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
error - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
error - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
ERROR_MSG - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
ERROR_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
ex - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
exception - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
exception - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
exception - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
exclude(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns a copy of this XenonProperties that contains all properties except the properties that start with the given prefix.
EXEC_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: execute/search by group
EXEC_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: execute/search by others
EXEC_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: execute/search by owner
executable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is the file executable ?
executable - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The executable to run.
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
exists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
exists(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Tests if a path exists.
exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
exitCode - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
exitcodeFromString(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
exitStatus - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
expandTilde(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Expand the tilde in a String representation of a path by the users home directory, as provided by the user.home property.
extractCredential(SshdSocketAddress, Credential) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
extractCredentials(String, SshdSocketAddress[], Credential) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
extractLocations(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: Extract a series of locations from a location string.
extractSocketAddress(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

F

factory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
factory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
FAILED_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: These are the states a job can be in when it has failed: FAILED: the job terminated with non-zero exit code or other failure condition.
FileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems
FileAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
fileExists(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
filesystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
filesystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
FileSystem - Class in nl.esciencecenter.xenon.filesystems: FileSystem represent a (possibly remote) file system that can be used to access data.
FileSystem(String, String, String, Credential, Path, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem
FileSystem.CopyCallback - Class in nl.esciencecenter.xenon.filesystems
FileSystem.CopyStatusImplementation - Class in nl.esciencecenter.xenon.filesystems: CopyStatus contains status information for a specific copy operation.
FileSystem.PendingCopy - Class in nl.esciencecenter.xenon.filesystems
FileSystemAdaptorDescription - Interface in nl.esciencecenter.xenon.filesystems
FileSystemClosedException - Exception in nl.esciencecenter.xenon.filesystems: Signals that a unknown Copy handle was provided.
FileSystemClosedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException
FileSystemClosedException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException
filter(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns a new XenonProperties that contains only the properties whose key start with a certain prefix.
filterOnKey(Map<K, V>, Predicate<K>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
filterUsingPredicate(Predicate<String>) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
findFTPFile(FTPFile[], Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
findInteractiveJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
findInteractiveJobInMap(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
findJob(List<JobExecutor>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
findJob(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
finished - Variable in class nl.esciencecenter.xenon.utils.InputWriter
finished - Variable in class nl.esciencecenter.xenon.utils.OutputReader
flush() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
fromHDFSPath(Path) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
fs - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
ftpClient - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
ftpClient - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
ftpClient - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
FtpFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp
FtpFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
FtpFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp
FtpFileSystem(String, String, String, Path, int, FTPClient, Credential, FtpFileAdaptor, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
FtpInputStream - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp: Wraps an InputStream instance.
FtpInputStream(InputStream, FTPClient) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
FtpOutputStream - Class in nl.esciencecenter.xenon.adaptors.filesystems.ftp: Wraps an OutputStream instance.
FtpOutputStream(OutputStream, FTPClient) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
future - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy

G

GATEWAY - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Add gateway to access machine.
GATEWAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Add gateway to access machine.
generate(JobDescription, Path, GridEngineSetup) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
generate(JobDescription, Path) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
generate(JobDescription, Path) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
generateInteractiveArguments(JobDescription, Path, UUID) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
generateParallelEnvironmentSpecification(JobDescription, GridEngineSetup, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
generateParallelScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
generateScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
generateSerialScriptContent(JobDescription, Formatter) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
get(String) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap: Retrieve the UserCredential stored using the key.
getAbsolutePath() - Method in class nl.esciencecenter.xenon.filesystems.Path: Return a String representation of this Path interpreted as an absolute path.
getAdaptorByName(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem
getAdaptorByName(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler
getAdaptorDescription(String) - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Gives the description of the adaptor with the given name.
getAdaptorDescription(String) - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Gives the description of the adaptor with the given name.
getAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Gives a list of the descriptions of the available adaptors.
getAdaptorDescriptions() - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Gives a list of the descriptions of the available adaptors.
getAdaptorName() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the name of the adaptor that created this FileSystem.
getAdaptorName() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the name of the adaptor that created this Scheduler.
getAdaptorNames() - Static method in class nl.esciencecenter.xenon.filesystems.FileSystem: Gives a list names of the available adaptors.
getAdaptorNames() - Static method in class nl.esciencecenter.xenon.schedulers.Scheduler: Gives a list names of the available adaptors.
getAllocationRule() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
getArguments() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the command line arguments of the executable.
getArguments() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Constructs the command line arguments from the class path, the JVM options, the system properties, the main and the java arguments.
getArguments(char) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Constructs the command line arguments from the class path, the JVM options, the system properties, the main and the java arguments.
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
getAttributes(Path, DavResource) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
getAttributes(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the PathAttributes of an existing path.
getBooleanProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of a boolean property with the given name.
getCertificateFile() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential: Returns the certificate file.
getCopyIdentifier() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Get the copy identifier for which this CopyStatus was created.
getCopyIdentifier() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
getCreationTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the creation time for this file.
getCreationTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the creation time for this file.
getCredential() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the credential that this FileSystem is using.
getCredential() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the credential that this Scheduler is using.
getCurrentJobID() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getCurrentWorkingDirectory(FTPClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
getCurrentWorkingDirectory(SftpClient, String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
getDeadline(long) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.Deadline: Calculate the epoch timestamp when a timeout will expire.
getDefault() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap: Returns the default UserCredential.
getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getDefaultQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getDefaultQueueName() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the name of the default queue.
getDefaultValue() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription: Returns the default value for this property.
getDescription() - Method in interface nl.esciencecenter.xenon.AdaptorDescription: Get the description of the adaptor.
getDescription() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor
getDescription() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription: Returns a human readable description of this property.
getDirectoryPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
getDoubleProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of an double property with the given name.
getEnvironment() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the environment of the executable.
getError() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get the exception produced by the Job or while retrieving the status.
getException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Get the exception produced by the queue, or null if hasException() returns false.
getException() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
getException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Get the exception produced by the Copy or while retrieving the status.
getException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
getException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get the exception produced by the Job or while retrieving the status.
getException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Get the exception produced by the queue, or null if hasException() returns false.
getExecutable() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the path to the executable.
getExecutable() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the executable.
getExeFile(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get the exit code for the Job.
getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
getExitCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
getExitCode() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get the exit code for the Job.
getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
getExitStatus() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process
getExitStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
getFileName() - Method in class nl.esciencecenter.xenon.filesystems.Path: Get the file name or null if the Path is empty.
getFileNameAsString() - Method in class nl.esciencecenter.xenon.filesystems.Path: Get the file name as a String, or null if the Path is empty.
getFilePath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
getFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
getFileSystem() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Retrieve the FileSystem used internally by this Scheduler.
getFTPFileInfo(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
getGroup() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the group of this file.
getGroup() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the group of this file (optional operation).
getHost(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
getIntegerProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of an integer property with the given name.
getIntegerProperty(String, int) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of an integer property with the given name.
getJavaArguments() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the arguments for the main class.
getJavaClasspath() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the java class path.
getJavaMain() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the main class of the java application.
getJavaOptions() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the JVM options.
getJavaSystemProperties() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Returns the java system properties.
getJobDescription() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get the job identifier of the Job for which this JobStatus was created.
getJobIdentifier() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation: Get the identifier of the job for which this Streams was created.
getJobIdentifier() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get the job identifier of the Job for which this JobStatus was created.
getJobIdentifier() - Method in interface nl.esciencecenter.xenon.schedulers.Streams: Get the identifier of the job for which this Streams was created.
getJobOptions() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get a copy of the job options of this job.
getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getJobs(List<JobExecutor>, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getJobs(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getJobs(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get all job identifier of jobs currently in (one ore more) queues.
getJobStatus(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler: Get job status.
getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getJobStatus(Map<String, Map<String, String>>, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler: Get job status.
getJobStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getJobStatus(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the status of a Job.
getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getJobStatuses(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the status of all specified jobs.
getJobStatusFromQacctInfo(Map<String, String>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
getJobStatusFromQstatInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
getJobStatusFromQstatInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
getJobStatusFromSacctInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
getJobStatusFromScontrolInfo(Map<String, String>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
getJobStatusFromSqueueInfo(Map<String, Map<String, String>>, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
getKeytabFile() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential
getKilled() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getLastAccessTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the last access time for this file.
getLastAccessTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the last access time for this file.
getLastModifiedTime() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the last modified time for this file.
getLastModifiedTime() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the last modified time for this file.
getLocalFileAttributes(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
getLocalFileAttributes(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
getLocalFileSystems() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Returns all local FileSystems.
getLocalRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Return the locally valid root element of an String representation of an absolute path.
getLocalRootlessPath(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Return the local root less path of an absolute path.
getLocalSeparator() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Returns the local file system path separator character.
getLocation() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the location of the FileSystem.
getLocation() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the location that this Scheduler is connected to.
getLongProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of an long property with the given name.
getMaxMemory() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the amount of memory needed for process (in MBytes).
getMaxRuntime() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the maximum job duration time in minutes.
getMessage() - Method in exception nl.esciencecenter.xenon.XenonException
getMessage() - Method in exception nl.esciencecenter.xenon.XenonRuntimeException
getName() - Method in interface nl.esciencecenter.xenon.AdaptorDescription: Get the name of the adaptor.
getName() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor
getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
getName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get the name of the Job for which this JobStatus was created.
getName(int) - Method in class nl.esciencecenter.xenon.filesystems.Path: Get an element of this Path.
getName() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the job name.
getName() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get the name of the Job for which this JobStatus was created.
getName() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription: Returns the name of the property.
getNameCount() - Method in class nl.esciencecenter.xenon.filesystems.Path: Get the number of elements in the Path.
getNaturalProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of an natural number property (e.g.
getNewUniqueID() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor
getNext() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
getNextCopyID() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
getNodeCount() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the number of nodes.
getOwner() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the owner of this file.
getOwner() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the owner of this file (optional operation).
getParallelEnvironments(GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
getParallelEnvironments() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
getParent() - Method in class nl.esciencecenter.xenon.filesystems.Path: Get the parent Path, or null if this Path does not have a parent.
getPassword(String) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider
getPassword() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential: Gets the password.
getPath() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the path these attributes belong to.
getPath() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the path these attributes belong to.
getPathSeparator() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the path separator used by this file system.
getPermissions(FTPFile) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
getPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the permissions of this file.
getPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the permissions of this file (optional operation).
getPort(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
getPosixFilePermission(int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
getPpn() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
getProcessesPerNode() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the number of processes to start on each node.
getProperties(XenonPropertyDescription[], String, Map<String, String>) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
getProperties() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the properties used to create this FileSystem.
getProperties() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the properties used to create this Scheduler.
getProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of a property with the given name without checking its type.
getProperty(String, XenonPropertyDescription.Type) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
getPropertyNames() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns a sorted list of all supported property names.
getQacctInfo(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getQstatInfo() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getQstatInfo() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getQueueName() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Get the queue name.
getQueueName() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the queue name;
getQueueName() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Get the queue name.
getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getQueueNames(GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getQueueNames() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the queue names supported by this Scheduler.
getQueues(String[], GridEngineScheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getQueueStatus(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getQueueStatus(String) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the status of the queue.
getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
getQueueStatuses(Map<String, Map<String, String>>, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
getQueueStatuses(String...) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Get the status of all queues.
getQueueStatusFromSInfo(Map<String, Map<String, String>>, String, Scheduler) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
getRelativePath() - Method in class nl.esciencecenter.xenon.filesystems.Path: Return a String representation of this Path interpreted as a relative path.
getResult() - Method in class nl.esciencecenter.xenon.utils.OutputReader: Returns the data that has been read from the InputStream as a byte array.
getResultAsString() - Method in class nl.esciencecenter.xenon.utils.OutputReader: Returns the data that has been read from the InputStream as a String.
getSacctInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getScheduler() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Get the Scheduler that produced this QueueStatus.
getScheduler() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Get the Scheduler that produced this QueueStatus.
getSchedulerArguments() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the scheduler specific arguments.
getSchedulerSpecificInformation() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get scheduler specific information on the Job.
getSchedulerSpecificInformation() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Get scheduler specific information on the queue.
getSchedulerSpecificInformation() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get scheduler specific information on the Job.
getSchedulerSpecificInformation() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Get scheduler specific information on the queue.
getSControlInfo(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getSeparator() - Method in class nl.esciencecenter.xenon.filesystems.Path: Get the separator.
getSession() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
getSinfoInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getSize() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Get the size of this file in bytes.
getSize() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Get the size of this file in bytes.
getSizeProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of a size property with the given name.
getSlots() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
getSlots() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
getSqueueInfo(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
getState() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getState() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Get the state of the Job.
getState() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Get the state of the Copy operation.
getState() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
getState() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Get the state of the Job.
getStatus() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getStatus(String) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Retrieve the status of an copy.
getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
getStderr() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation: Returns the standard error stream of job.
getStderr() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Gets the path to the file to which the executable must redirect stderr.
getStderr() - Method in interface nl.esciencecenter.xenon.schedulers.Streams: Returns the standard error stream of job.
getStdin() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation: Returns the standard input stream of job.
getStdin() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Gets the path to the file from which the executable must redirect stdin.
getStdin() - Method in interface nl.esciencecenter.xenon.schedulers.Streams: Returns the standard input stream of job.
getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
getStdout() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation: Returns the standard output stream of job.
getStdout() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Gets the path to the file to which the executable must redirect stdout.
getStdout() - Method in interface nl.esciencecenter.xenon.schedulers.Streams: Returns the standard output stream of job.
getStreams() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcess
getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
getStreams() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
getStringProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Retrieves the value of a string property with the given name.
getSupportedCredentials() - Method in interface nl.esciencecenter.xenon.AdaptorDescription: Get the supported credential types for this adaptor.
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingSchedulerAdaptor
getSupportedCredentials() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
getSupportedLocations() - Method in interface nl.esciencecenter.xenon.AdaptorDescription: Get the supported locations for this adaptor.
getSupportedLocations() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor
getSupportedProperties() - Method in interface nl.esciencecenter.xenon.AdaptorDescription: Returns an array containing all properties this adaptor supports.
getSupportedProperties() - Method in class nl.esciencecenter.xenon.adaptors.Adaptor
getSupportedProperties() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns the descriptions of all supported properties.
getTempSpace() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the amount of temp space needed for process (in MBytes).
getThreadsPerProcess() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Get the number of threads needed per process.
getType() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription: Returns the type of the property.
getUsername() - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential
getUsername() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential
getUsername() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential
getUsername() - Method in interface nl.esciencecenter.xenon.credentials.UserCredential: Returns the user name associated with this credential.
getWorkingDirectory() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
getWorkingDirectory() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Get the current working directory of this file system.
getWorkingDirectory() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Gets the path of the working directory for the executable.
getWorkingDirPath(JobDescription, Path) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
GIGA - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties: One giga is a kilo*kilo*kilo
GridEngineScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Interface to the GridEngine command line tools.
GridEngineScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
GridEngineSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine
GridEngineSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor
GridEngineSetup - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Holds some info on the specifics of the machine we are connected to, such as queues and parallel environments.
GridEngineSetup(GridEngineScheduler) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
GridEngineSetup(String[], Map<String, QueueInfo>, Map<String, ParallelEnvironmentInfo>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup: Testing constructor.
GridEngineUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Generator for GridEngine job script.
GridEngineUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
GridEngineXmlParser - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Parses xml output from various grid engine command line tools.
GridEngineXmlParser(boolean) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
group - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The group of this file

H

HADOOP_SETTINGS_FILE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
hasException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Has the Job or job retrieval produced a exception ?
hasException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Did the queue produce an exception ?
hasException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Has the Copy or status retrieval produced a exception ?
hasException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
hasException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Has the Job or job retrieval produced a exception ?
hasException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Did the queue produce an exception ?
hashCode() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
hashCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
hashCode() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
hashCode() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential
hashCode() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap
hashCode() - Method in class nl.esciencecenter.xenon.credentials.DefaultCredential
hashCode() - Method in class nl.esciencecenter.xenon.credentials.KeytabCredential
hashCode() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential
hashCode() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
hashCode() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
hashCode() - Method in class nl.esciencecenter.xenon.filesystems.Path
hashCode() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription
hashCode() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler
hashCode() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription
hasNext() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
hasNext() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.RecursiveListIterator
hasNext() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
hasNext() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator
hasRun - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
hasRun() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
haveRecentlySeen(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
haveRecentlySeen(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
HDFSFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.hdfs: Created by atze on 3-7-17.
HDFSFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
HDFSFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.hdfs
HDFSFileSystem(String, String, Credential, FileSystem, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
hidden - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is the file hidden ?
hops - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
HORIZONTAL_LINE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser

I

identifiersAsCSList(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
IGNORE_VERSION_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: Should the grid engine version on the target machine be ignored ?
IGNORE_VERSION_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: Should the grid engine version on the target machine be ignored ?
ignoreVersion - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
in - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter
in - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder
IncompatibleVersionException - Exception in nl.esciencecenter.xenon.adaptors.schedulers: Signals that an adaptor is unable to connect to a resource due to version problems.
IncompatibleVersionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException
IncompatibleVersionException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException
IncompleteJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers: Signals that a JobDescription is missing required options.
IncompleteJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException
IncompleteJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException
index - Variable in class nl.esciencecenter.xenon.filesystems.Path.PathIterator
INFO - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Local queue information start with this prefix.
INFO - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Ssh adaptor information start with this prefix.
inputStream - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
InputWriter - Class in nl.esciencecenter.xenon.utils: A simple input writer that uses a daemon thread to write from an String to an OutputStream.
InputWriter(String, OutputStream) - Constructor for class nl.esciencecenter.xenon.utils.InputWriter: Create a new InputWriter that writes content to the destination.
interactive - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
InteractiveProcess - Interface in nl.esciencecenter.xenon.adaptors.schedulers
InteractiveProcessFactory - Interface in nl.esciencecenter.xenon.adaptors.schedulers
InvalidCredentialException - Exception in nl.esciencecenter.xenon: Signals that an invalid credential was used to access a resource.
InvalidCredentialException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidCredentialException
InvalidCredentialException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidCredentialException
InvalidJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers: Signals that a JobDescription contains invalid values for certain options.
InvalidJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException
InvalidJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException
InvalidLocationException - Exception in nl.esciencecenter.xenon: Signals that an invalid location was provided.
InvalidLocationException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidLocationException
InvalidLocationException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidLocationException
InvalidOptionsException - Exception in nl.esciencecenter.xenon.filesystems: Signals that an invalid combination of OpenOptions have been specified.
InvalidOptionsException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException
InvalidOptionsException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException
InvalidPathException - Exception in nl.esciencecenter.xenon.filesystems: Signals that an end-of-file was encountered.
InvalidPathException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidPathException
InvalidPathException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidPathException
InvalidPropertyException - Exception in nl.esciencecenter.xenon: Signals that a property has a different type than the get method it was retrieved with.
InvalidPropertyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.InvalidPropertyException
InvalidPropertyException(String, String) - Constructor for exception nl.esciencecenter.xenon.InvalidPropertyException
InvalidResumeTargetException - Exception in nl.esciencecenter.xenon.filesystems: Signals that the data in the target of a resume does not match the data in the source.
InvalidResumeTargetException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException
InvalidResumeTargetException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException
isAbsolute - Variable in class nl.esciencecenter.xenon.filesystems.Path: Does path start with / ?
isAbsolute() - Method in class nl.esciencecenter.xenon.filesystems.Path
isCancelled() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
isClosed() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
isConnectionless() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
isConnectionless() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
isDirectory - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is this a directory ?
isDirectory() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to a directory ?
isDirectory() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to a directory ?
isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Is the Job done.
isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
isDone() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.Process
isDone() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
isDone() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Is the Copy done?
isDone() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
isDone() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Is the Job done.
isDoneOrFailedState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: Is the given state a done or failed state ?
isDoneState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: Is the given state a done state ?
isDotDot(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem
isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor
isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
isEmbedded() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
isEmbedded() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription: Is this an embedded scheduler ? Embedded schedulers are implemented inside the Xenon process itself.
isEmpty() - Method in class nl.esciencecenter.xenon.filesystems.Path: Is this Path empty ?
isExecutable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to an executable file ?
isExecutable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
isExecutable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to an executable file ?
isFailedState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: Is the given state a failed state ?
isFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter: Poll if the InputWriter has finished writing.
isFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader: Returns if the OutputReader has finished (i.e., has reached the end-of-stream on the input).
isHidden() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to an hidden file ?
isHidden() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to an hidden file ?
isLinux() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Returns if we are currently running on Linux.
isLinuxRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Check if root only contains a valid Linux root element, which is "/".
isLocal(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
isLocalRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Check if root contains a locally valid root element, such as "C:" on Windows or "/" on Linux and OSX.
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
isOpen() - Method in interface nl.esciencecenter.xenon.adaptors.schedulers.InteractiveProcessFactory
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory
isOpen() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
isOpen() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Return if the connection to the FileSystem is open.
isOpen() - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Test if the connection of this Scheduler is open.
isOSX() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Returns if we are currently running on OSX.
isOSXRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Check if root contains a valid OSX root element, which is "/".
isOther - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is this an other type of file ?
isOther() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is the path not a file, link or directory ?
isOther() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Is the path not a file, link or directory ?
isPendingState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: Is the given state a pending state ?
isReadable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to an readable file ?
isReadable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
isReadable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to an readable file ?
isRegular - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is this a regular file ?
isRegular() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to a regular file ?
isRegular() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to a regular file ?
isRunning - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
isRunning() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Is the Job running.
isRunning() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Is the Copy still running?
isRunning() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
isRunning() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Is the Job running.
isRunningState(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: Is the given state a running state ?
isSSH(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
isStarted() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
isStartSingleProcess() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Is only a single process started?
isSymbolicLink - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is this a symbolic link ?
isSymbolicLink() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to a symbolic link ?
isSymbolicLink() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to a symbolic link ?
isWindows() - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Returns if we are currently running on Windows.
isWindowsRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Check if root only contains a valid Windows root element such as "C:".
isWritable() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Does the path refer to a writable file ?
isWritable(int) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
isWritable() - Method in interface nl.esciencecenter.xenon.filesystems.PathAttributes: Does the path refer to a writable file ?
iterator() - Method in class nl.esciencecenter.xenon.filesystems.Path: Create an Iterator that returns all possible sub Paths of this Path, in order of increasing length.

J

javaArguments - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription
javaClasspath - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription
JavaJobDescription - Class in nl.esciencecenter.xenon.utils: A JobDescription specialized in Java applications.
JavaJobDescription() - Constructor for class nl.esciencecenter.xenon.utils.JavaJobDescription
javaMain - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription
javaOptions - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription
javaPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
javaPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
javaSystemProperties - Variable in class nl.esciencecenter.xenon.utils.JavaJobDescription
JCloudsFileSytem - Class in nl.esciencecenter.xenon.adaptors.filesystems.jclouds
JCloudsFileSytem(String, String, String, Credential, Path, BlobStoreContext, String, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
JCloudsFileSytem.ListingIterator - Class in nl.esciencecenter.xenon.adaptors.filesystems.jclouds
JCloudsFileSytem.RecursiveListIterator - Class in nl.esciencecenter.xenon.adaptors.filesystems.jclouds
JOB_OPTION_JOB_CONTENTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
JOB_OPTION_JOB_SCRIPT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
JOB_OPTION_JOB_SCRIPT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
JOB_OPTION_JOB_SCRIPT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
JOB_OPTION_PARALLEL_ENVIRONMENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
JOB_OPTION_PARALLEL_SLOTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
JOB_OPTION_RESOURCES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
JOB_OPTION_RESOURCES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
JobCanceledException - Exception in nl.esciencecenter.xenon.adaptors.schedulers: Signals that a jobs has been canceled by the user.
JobCanceledException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException
JobCanceledException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException
JobDescription - Class in nl.esciencecenter.xenon.schedulers: JobDescription contains a description of a job that can be submitted to a Scheduler.
JobDescription() - Constructor for class nl.esciencecenter.xenon.schedulers.JobDescription: Create a JobDescription.
JobDescription(JobDescription) - Constructor for class nl.esciencecenter.xenon.schedulers.JobDescription: Create a JobDescription by copying an existing one.
JobExecutor - Class in nl.esciencecenter.xenon.adaptors.schedulers
JobExecutor(String, FileSystem, Path, InteractiveProcessFactory, JobDescription, String, boolean, long, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
jobID - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
jobIdentifier - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
jobOptions - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The job options of this job
JobQueueScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers
JobQueueScheduler(String, String, String, Credential, InteractiveProcessFactory, FileSystem, Path, int, long, long, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
JobQueueScheduler.DaemonThreadFactory - Class in nl.esciencecenter.xenon.adaptors.schedulers: Simple thread factory which returns daemon threads instead of normal threads
JOBS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Local job information start with this prefix.
JOBS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Ssh job information start with this prefix.
jobsFromStatus(String, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
jobsFromStatus(String, List<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
JobStatus - Interface in nl.esciencecenter.xenon.schedulers: JobStatus contains status information for a specific job.
JobStatusImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers: JobStatus contains status information for a specific job.
JobStatusImplementation(String, String, String, Integer, XenonException, boolean, boolean, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation: Create a JobStatus.
jobWasDeleted(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
jobWasDeleted(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler

K

keySet() - Method in class nl.esciencecenter.xenon.credentials.CredentialMap: Returns a Set view of the keys contained in this map.
KeytabCredential - Class in nl.esciencecenter.xenon.credentials
KeytabCredential(String, String) - Constructor for class nl.esciencecenter.xenon.credentials.KeytabCredential
keytabFile - Variable in class nl.esciencecenter.xenon.credentials.KeytabCredential
kill() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
killed - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
KILLED_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
KILO - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties: One kilo is 1024

L

lastAccessTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The last access time of this file
lastModifiedTime - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The last modified time of this file
lastSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler: Map with the last seen time of jobs.
lastSeenMap - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler: Map with the last seen time of jobs.
list(Path, boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
list(Path, boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
list - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
list(Path, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: List all entries in the directory dir.
list(Path, ArrayList<PathAttributes>, boolean) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Returns an (optionally recursive) listing of the entries in a directory dir.
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
listDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Return the list of entries in a directory.
ListingIterator(ListContainerOptions, PageSet<? extends StorageMetadata>) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
listIterator(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
listIteratorNoException(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
listNonRecursiveIterator(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
listPrefix(String, boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
LOAD_SSH_CONFIG - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Load the OpenSSH config file by default.
LOAD_SSH_CONFIG - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Load the OpenSSH config file by default.
LOAD_STANDARD_KNOWN_HOSTS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Load the known_hosts file by default.
LOAD_STANDARD_KNOWN_HOSTS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Load the known_hosts file by default.
LocalFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.local: LocalFiles implements an Xenon Files adaptor for local file operations.
LocalFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
LocalFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.local
LocalFileSystem(String, String, Credential, String, Path, int, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
LocalFileSystemUtils - Class in nl.esciencecenter.xenon.utils
LocalFileSystemUtils() - Constructor for class nl.esciencecenter.xenon.utils.LocalFileSystemUtils
LocalInteractiveProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers.local: LocalInteractiveProcess implements a InteractiveProcess for local interactive processes.
LocalInteractiveProcess(JobDescription, String, String) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
LocalInteractiveProcessFactory - Class in nl.esciencecenter.xenon.adaptors.schedulers.local
LocalInteractiveProcessFactory() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory
LocalSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.local: LocalFiles implements an Xenon Jobs adaptor for local job operations.
LocalSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor
location - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
location - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser
LOGGER - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
LOGGER - Static variable in class nl.esciencecenter.xenon.utils.InputWriter
LOGGER - Static variable in class nl.esciencecenter.xenon.utils.StreamForwarder
login(Credential, FTPClient) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
loginWithCredentialOrDefault(FTPClient, Credential) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor

M

makeBlobAttributes(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
makeDirAttributes(StorageMetadata) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
makeDirectoryPlaceholder(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
map - Variable in class nl.esciencecenter.xenon.credentials.CredentialMap
mapFromElement(Element) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
mark(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
markSupported() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
MAX_HISTORY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Property for maximum history length for finished jobs
MAX_HISTORY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Maximum history length for finished jobs
MAX_POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler: The maximum allowed value for the polling delay
maxMemory - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The maximum amount of memory needed (in MB) on each node/process.
maxRuntime - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The maximum run time in minutes.
maybeThrowException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
maybeThrowException() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
maybeThrowException() - Method in interface nl.esciencecenter.xenon.filesystems.CopyStatus: Throws the exception that occured during copying, if it exists.
maybeThrowException() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
maybeThrowException() - Method in interface nl.esciencecenter.xenon.schedulers.JobStatus: Throws the exception produced by the Job or while retrieving the status, if it exists.
maybeThrowException() - Method in interface nl.esciencecenter.xenon.schedulers.QueueStatus: Throws the exception produced by the queue if it exists.
MEGA - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties: One mega is a kilo*kilo
mergeTuples(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
mergeValidProperties(XenonPropertyDescription[]...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
MILLISECONDS_PER_MINUTE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Number of ms.
MIN_POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler: The minimal allowed value for the polling delay
MINUTES_PER_HOUR - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
MINUTES_PER_HOUR - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
MULTI_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
multiExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
multiQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
MULTIQ - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Local multi queue properties start with this prefix.
MULTIQ - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Local multi queue properties start with this prefix.
MULTIQ_MAX_CONCURRENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Property for the maximum number of concurrent jobs in the multi queue.
MULTIQ_MAX_CONCURRENT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Property for the maximum number of concurrent jobs in the multi queue.

N

name - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor
name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
name - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
NAME - Static variable in class nl.esciencecenter.xenon.adaptors.XenonProperties
name - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The name of the job.
name - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription
needsSizeBeforehand() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
needsSizeBeforehand() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
needsSizeBeforehand() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
NEWLINE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
newThread(Runnable) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler.DaemonThreadFactory
next() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
next() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.RecursiveListIterator
next() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
next() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator
nextCopyID - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
nl.esciencecenter.xenon - package nl.esciencecenter.xenon: This package is the main entry point into the Xenon API.
nl.esciencecenter.xenon.adaptors - package nl.esciencecenter.xenon.adaptors
nl.esciencecenter.xenon.adaptors.filesystems - package nl.esciencecenter.xenon.adaptors.filesystems
nl.esciencecenter.xenon.adaptors.filesystems.ftp - package nl.esciencecenter.xenon.adaptors.filesystems.ftp
nl.esciencecenter.xenon.adaptors.filesystems.hdfs - package nl.esciencecenter.xenon.adaptors.filesystems.hdfs
nl.esciencecenter.xenon.adaptors.filesystems.jclouds - package nl.esciencecenter.xenon.adaptors.filesystems.jclouds
nl.esciencecenter.xenon.adaptors.filesystems.local - package nl.esciencecenter.xenon.adaptors.filesystems.local
nl.esciencecenter.xenon.adaptors.filesystems.s3 - package nl.esciencecenter.xenon.adaptors.filesystems.s3
nl.esciencecenter.xenon.adaptors.filesystems.sftp - package nl.esciencecenter.xenon.adaptors.filesystems.sftp
nl.esciencecenter.xenon.adaptors.filesystems.webdav - package nl.esciencecenter.xenon.adaptors.filesystems.webdav
nl.esciencecenter.xenon.adaptors.schedulers - package nl.esciencecenter.xenon.adaptors.schedulers
nl.esciencecenter.xenon.adaptors.schedulers.gridengine - package nl.esciencecenter.xenon.adaptors.schedulers.gridengine
nl.esciencecenter.xenon.adaptors.schedulers.local - package nl.esciencecenter.xenon.adaptors.schedulers.local
nl.esciencecenter.xenon.adaptors.schedulers.slurm - package nl.esciencecenter.xenon.adaptors.schedulers.slurm
nl.esciencecenter.xenon.adaptors.schedulers.ssh - package nl.esciencecenter.xenon.adaptors.schedulers.ssh
nl.esciencecenter.xenon.adaptors.schedulers.torque - package nl.esciencecenter.xenon.adaptors.schedulers.torque
nl.esciencecenter.xenon.adaptors.shared.ssh - package nl.esciencecenter.xenon.adaptors.shared.ssh
nl.esciencecenter.xenon.credentials - package nl.esciencecenter.xenon.credentials: This package contains classes and interfaces for managing credentials.
nl.esciencecenter.xenon.filesystems - package nl.esciencecenter.xenon.filesystems: This package contains classes and interfaces for manipulating files.
nl.esciencecenter.xenon.schedulers - package nl.esciencecenter.xenon.schedulers: This package contains the classes and interfaces used to run jobs.
nl.esciencecenter.xenon.utils - package nl.esciencecenter.xenon.utils: This package is contains several utility classes.
nodeCount - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The number of nodes to run the job on.
normalize() - Method in class nl.esciencecenter.xenon.filesystems.Path: Normalize this Path by removing as many redundant path elements as possible.
NoSpaceException - Exception in nl.esciencecenter.xenon.adaptors.filesystems: Signals that an end-of-file was encountered.
NoSpaceException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException
NoSpaceException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException
NoSuchCopyException - Exception in nl.esciencecenter.xenon.filesystems: Signals that a unknown Copy handle was provided.
NoSuchCopyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException
NoSuchCopyException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException
NoSuchJobException - Exception in nl.esciencecenter.xenon.schedulers: Signals that a Job was not found.
NoSuchJobException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchJobException
NoSuchJobException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchJobException
NoSuchPathException - Exception in nl.esciencecenter.xenon.filesystems: Signals that a path does not exists.
NoSuchPathException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchPathException
NoSuchPathException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.NoSuchPathException
NoSuchQueueException - Exception in nl.esciencecenter.xenon.schedulers: Signals that a unknown queue was provided.
NoSuchQueueException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException
NoSuchQueueException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException
NOT_EMPTY - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
NotConnectedException - Exception in nl.esciencecenter.xenon.adaptors: Signals that there was no connection.
NotConnectedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.NotConnectedException
NotConnectedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.NotConnectedException
nxt - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator

O

OK_CODE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
open - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
open - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcessFactory
options - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.ListingIterator
OS_PROPERTY - Static variable in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils
out - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.CommandRunner
out - Variable in class nl.esciencecenter.xenon.utils.StreamForwarder
output - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
OutputReader - Class in nl.esciencecenter.xenon.utils: A simple output reader that uses a daemon thread to read from an InputStream and buffer this data.
OutputReader(InputStream) - Constructor for class nl.esciencecenter.xenon.utils.OutputReader: Create an OutputReader that reads from source.
outputStream - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
owner - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The owner of this file

P

ParallelEnvironmentInfo - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Class that holds some info on parallel environments used in Grid Engine.
ParallelEnvironmentInfo(Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
ParallelEnvironmentInfo(String, int, ParallelEnvironmentInfo.AllocationRule, int) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
ParallelEnvironmentInfo.AllocationRule - Enum in nl.esciencecenter.xenon.adaptors.schedulers.gridengine
parallelEnvironments - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
parallelEnvironments - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
parseDocument(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
parseDocument(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser
parseJobIDFromLine(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Get a JobID (number) from a line of input.
parseJobInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser: Parses job info from "qstat -xml"
parseJobInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser: Parses job info from "qstat -x"
parseKeyValueLines(String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Parses lines containing single key/value pairs separated by the given separator, possibly surrounded by whitespace.
parseKeyValuePairs(String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Parses a output with key=value pairs separated by whitespace, on one or more lines.
parseKeyValueRecords(String, String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Parses multiple key value records.
parseList(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Parses a list of strings, separated by whitespace (including newlines) Trailing empty strings are not included.
parseQueueInfos(String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser: Parses queue info from "qstat -g c -xml"
parser - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
parser - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
parseSizeValue(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
parseTable(String, String, Pattern, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser: Parses lines containing multiple values.
password - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider
password - Variable in class nl.esciencecenter.xenon.credentials.PasswordCredential: Must be char array for security!! (Strings end up in the constant pool, etc.)
PasswordCredential - Class in nl.esciencecenter.xenon.credentials: A Credential consisting of a username + password combination.
PasswordCredential(String, String) - Constructor for class nl.esciencecenter.xenon.credentials.PasswordCredential: Create a new PasswordCredential using a String as password.
PasswordCredential(String, char[]) - Constructor for class nl.esciencecenter.xenon.credentials.PasswordCredential: Create a new PasswordCredential using a char array as password.
PasswordProvider(char[]) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.PasswordProvider
path - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The path these attributes belong to
Path - Class in nl.esciencecenter.xenon.filesystems: Path contains a sequence of path elements separated by a separator.
Path() - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new empty Path using the default separator.
Path(String) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path by parsing path using the default separator.
Path(char, String) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path by parsing path using the provided separator.
Path(boolean, String...) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path using the given path elements and the default separator.
Path(char, boolean, String...) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path using the given path elements and the provided separator.
Path(boolean, List<String>) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path using the given path elements and the default separator.
Path(char, boolean, List<String>) - Constructor for class nl.esciencecenter.xenon.filesystems.Path: Create a new Path using the given path separator, absoluteness, and elements.
Path.PathIterator - Class in nl.esciencecenter.xenon.filesystems
PATH_ELEMENT_LENGTH - Static variable in class nl.esciencecenter.xenon.filesystems.Path: Estimate of path element String length.
PathAlreadyExistsException - Exception in nl.esciencecenter.xenon.filesystems: Signals that a path already exists.
PathAlreadyExistsException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException
PathAlreadyExistsException(String, String) - Constructor for exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException
PathAttributes - Interface in nl.esciencecenter.xenon.filesystems: FileAttributes represents a set of attributes of a path.
PathAttributesImplementation - Class in nl.esciencecenter.xenon.adaptors.filesystems: FileAttributes represents a set of attributes of a path.
PathAttributesImplementation() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
PathIterator() - Constructor for class nl.esciencecenter.xenon.filesystems.Path.PathIterator
PENDING_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
PENDING_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: These are the states a job can be in when it is pending: PENDING: the job is awaiting resource allocation.
pendingCopies - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
PendingCopy(Future<Void>, FileSystem.CopyCallback) - Constructor for class nl.esciencecenter.xenon.filesystems.FileSystem.PendingCopy
performCopy(Path, FileSystem, Path, CopyMode, boolean, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Perform a (possibly) recursive copy from a path on this filesystem to a path on destinationFS.
PERMISSION_TYPES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
PermissionDeniedException - Exception in nl.esciencecenter.xenon.adaptors.filesystems: Signals that the user does not have sufficient permissions to perform the operation.
PermissionDeniedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException
PermissionDeniedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException
permissions - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The permissions of this file (POSIX only)
permissionsToBits(Set<PosixFilePermission>) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: Polling delay for jobs started by this adaptor.
POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: Polling delay for jobs started by this adaptor.
POLL_DELAY_PROPERTY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: Polling delay for jobs started by this adaptor.
pollDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Polling delay in ms.
POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Property for maximum history length for finished jobs
POLLING_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Property for maximum history length for finished jobs
pollingDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
pollingDelay - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
pool - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
popEmpties() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.RecursiveListIterator
popEmpties() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
PosixFilePermission - Enum in nl.esciencecenter.xenon.filesystems: PosixFilePermission is an enumeration containing all supported Posix file permissions.
PosixFilePermission() - Constructor for enum nl.esciencecenter.xenon.filesystems.PosixFilePermission
PosixFileUtils - Class in nl.esciencecenter.xenon.adaptors.filesystems: PosixFileUtils contains several utility functions related to Posix files.
PosixFileUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils
ppn - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: Local properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: The prefix used by all properties related to this adaptor
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Local properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: The prefix used by all properties related to this adaptor
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: All our own properties start with this prefix.
PREFIX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: The prefix used by all properties related to this adaptor
printProperties(PrintStream, String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Prints properties (including default properties) to a stream.
process - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
process - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
Process - Interface in nl.esciencecenter.xenon.adaptors.schedulers
processesPerNode - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The number of processes to start/reserve per node.
processPath(Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
processPath(Path, String) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
properties - Variable in class nl.esciencecenter.xenon.adaptors.XenonProperties: The properties that are actually set.
properties - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
properties - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler
propertyDescriptions - Variable in class nl.esciencecenter.xenon.adaptors.XenonProperties: Contains a description of all properties this XenonProperties should accept, including their type, default, etc.
propertySet(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Check if the property with the given name is set.
PropertyTypeException - Exception in nl.esciencecenter.xenon: Signals that a property has a different type than the get method it was retrieved with.
PropertyTypeException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.PropertyTypeException
PropertyTypeException(String, String) - Constructor for exception nl.esciencecenter.xenon.PropertyTypeException
protectAgainstShellMetas(String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.CommandLineUtils: Escapes and quotes command line arguments to keep shells from expanding/interpreting them.
put(String, UserCredential) - Method in class nl.esciencecenter.xenon.credentials.CredentialMap: Add a Credential to the CredentialMap using key as a unique key.

Q

QACCT_HEADER - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
qconfPeDetailsArguments(String[]) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup: generate arguments to list details of all parallel environments given
queryQueueNames() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
queryQueues(String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
QUEUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: Local queue properties start with this prefix.
QUEUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: All our own queue properties start with this prefix.
QUEUE_INFO_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
QueueInfo - Class in nl.esciencecenter.xenon.adaptors.schedulers.gridengine: Class that holds some info on queues used in Grid Engine.
QueueInfo(Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
QueueInfo(String, int, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo: Testing constructor
queueName - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
queueName - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The queue to submit to.
queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
queueNames - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
queues - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSetup
queues - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
QueueStatus - Interface in nl.esciencecenter.xenon.schedulers: QueueStatus contains status information for a specific queue.
QueueStatusImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers: QueueStatus contains status information for a specific queue.
QueueStatusImplementation(Scheduler, String, XenonException, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation: Create a Queue status.

R

read() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
read(byte[]) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
read(byte[], int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
READ_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: read by group
READ_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: read by others
READ_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: read by owner
readable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is the file readable ?
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
readFromFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Open an existing file and return an InputStream to read from this file.
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
readSymbolicLink(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Reads the target of a symbolic link (optional operation).
RecursiveListIterator(Iterator<PathAttributes>) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.RecursiveListIterator
RecursiveListIterator - Class in nl.esciencecenter.xenon.adaptors.filesystems
RecursiveListIterator(Function<Path, Iterator<PathAttributes>>, Path) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
recursiveMapFromElement(Node, Map<String, String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser: Create a Map from the tag names and text values of child nodes.
relativize(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path: Create a relative Path between the given Path and this Path.
RemoteCommandRunner - Class in nl.esciencecenter.xenon.adaptors.schedulers: Runs a command.
RemoteCommandRunner(Scheduler, String, String, String...) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner: Run a command remotely, and save stdout, stderr, and exit code for later processing.
remove() - Method in class nl.esciencecenter.xenon.filesystems.Path.PathIterator
removeDirectoryPlaceholder(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
rename(Path, Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Rename an existing source path to a non-existing target path (optional operation).
reset() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
resolve(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path: Resolve a Path against this Path.
resolve(String) - Method in class nl.esciencecenter.xenon.filesystems.Path: Resolve a Path represented as a String against this path.
resolveSibling(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path: Resolves the given Path to this paths parent Path, thereby creating a sibling to this Path.
root - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
run() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter
run() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
run() - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
run() - Method in class nl.esciencecenter.xenon.utils.InputWriter: Entry point for the Daemon thread.
run() - Method in class nl.esciencecenter.xenon.utils.OutputReader: Entry method for daemon thread.
run() - Method in class nl.esciencecenter.xenon.utils.StreamForwarder: Main entry method for the daemon thread.
runCheckedCommand(String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Run a command until completion.
runCommand(String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Run a command on the remote scheduler machine.
running - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
RUNNING_STATE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
RUNNING_STATES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils: These are the states a job can be in when it is running: CONFIGURING: the resources are available and being preparing to run the job (for example by booting).

S

S3FileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.s3: Created by atze on 29-6-17.
S3FileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
scheduler - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
Scheduler - Class in nl.esciencecenter.xenon.schedulers: Scheduler represents a (possibly remote) scheduler that can be used to submit jobs and retrieve queue information.
Scheduler(String, String, String, Credential, XenonProperties) - Constructor for class nl.esciencecenter.xenon.schedulers.Scheduler
SchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers
SchedulerAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
SchedulerAdaptorDescription - Interface in nl.esciencecenter.xenon.schedulers
schedulerArguments - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The arguments to pass to the scheduler.
SchedulerClosedException - Exception in nl.esciencecenter.xenon.adaptors.schedulers: Signals that a unknown Copy handle was provided.
SchedulerClosedException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException
SchedulerClosedException(String, String) - Constructor for exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException
schedulerSpecificInformation - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
schedulerSpecificInformation - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
ScriptingParser - Class in nl.esciencecenter.xenon.adaptors.schedulers
ScriptingParser() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
ScriptingScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers: Connection to a remote scheduler, implemented by calling command line commands over a ssh connection.
ScriptingScheduler(String, String, String, Credential, Map<String, String>, XenonPropertyDescription[], String) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
ScriptingSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers
ScriptingSchedulerAdaptor(String, String, String[], XenonPropertyDescription[]) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingSchedulerAdaptor
ScriptingUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers
ScriptingUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
separator - Variable in class nl.esciencecenter.xenon.filesystems.Path: The separator used in this path
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.ConnectionLostException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.EndOfFileException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.NoSpaceException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.filesystems.PermissionDeniedException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.NotConnectedException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.BadParameterException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.IncompatibleVersionException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.JobCanceledException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.local.CommandNotFoundException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.schedulers.SchedulerClosedException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.shared.ssh.CertificateNotFoundException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.adaptors.shared.ssh.CredentialNotFoundException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.AttributeNotSupportedException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.DirectoryNotEmptyException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.FileSystemClosedException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidOptionsException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidPathException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.InvalidResumeTargetException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.NoSuchCopyException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.NoSuchPathException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.filesystems.PathAlreadyExistsException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidCredentialException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidLocationException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.InvalidPropertyException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.PropertyTypeException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.IncompleteJobDescriptionException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.InvalidJobDescriptionException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.NoSuchJobException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.NoSuchQueueException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnknownAdaptorException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnknownPropertyException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.UnsupportedOperationException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.XenonException
serialVersionUID - Static variable in exception nl.esciencecenter.xenon.XenonRuntimeException
server - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
server - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
session - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
session - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
sessions - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
setArguments(String...) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the command line arguments of the executable.
setArguments(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: This method should not be used.
setCreationTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setDirectory(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setEnvironment(Map<String, String>) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the environment of the executable.
setExecutable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setExecutable(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the path to the executable.
setFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter
setFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader
setGroup(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setHidden(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setJavaArguments(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Sets the arguments of the java main class.
setJavaClasspath(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Sets the java class path.
setJavaMain(String) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Sets the main class.
setJavaOptions(String...) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Sets the JVM options.
setJavaSystemProperties(Map<String, String>) - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription: Sets the system properties.
setJobOptions(Map<String, String>) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the job options of the job.
setLastAccessTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setLastModifiedTime(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setMaxMemory(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the amount of memory needed for process (in MBytes).
setMaxRuntime(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the maximum job duration in minutes.
setName(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the name of the job.
setNodeCount(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the number of nodes.
setOther(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setOwner(String) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Sets the POSIX permissions of a path (optional operation).
setProcessesPerNode(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the number of processes started on each node.
setQueueName(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the queue name;
setReadable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setRegular(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setSchedulerArguments(String...) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the scheduler specific arguments for this job.
setSession(ClientSession) - Method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
setSize(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setStartSingleProcess(boolean) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set if only a single process is started, instead of nodeCount * processesPerNode.
setStderr(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the path to the file to which the executable must redirect stderr.
setStdin(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the path to the file from which the executable must redirect stdin.
setStdout(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the path to the file to which the executable must redirect stdout.
setStreams(Streams) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
setSymbolicLink(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
setTempSpace(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the amount of memory needed for process (in MBytes).
setThreadsPerProcess(int) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Set the number of threads needed per process.
setup - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
setupInfo - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
setWorkingDirectory(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Set the current working directory of this file system to directory.
setWorkingDirectory(String) - Method in class nl.esciencecenter.xenon.schedulers.JobDescription: Sets the path of the working directory for the executable.
setWritable(boolean) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
sftpExceptionToXenonException(IOException, String) - Static method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
SftpFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.sftp
SftpFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
SftpFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.sftp
SftpFileSystem(String, String, String, Credential, Path, int, SSHConnection, SftpClient, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
SGE62_SCHEMA_ATTRIBUTE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
SGE62_SCHEMA_VALUE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineXmlParser
SINGLE_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
singleExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
singleQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
size - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: The size of this file
skip(long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
sleep(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Sleep for a certain amount of time, provide the job is not done, and no one requested an update.
sleep(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
slots - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
slots - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
SLURM_UPDATE_SLEEP - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
SLURM_UPDATE_TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
SlurmScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm: Interface to the GridEngine command line tools.
SlurmScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
SlurmSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm: Adaptor for Slurm scheduler.
SlurmSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
SlurmSetup - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm
SlurmSetup(Map<String, String>, boolean) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
SlurmUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.slurm
SlurmUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
socket - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
source - Variable in class nl.esciencecenter.xenon.utils.OutputReader
SSH_CONFIG_FILE - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: OpenSSH config filename.
SSH_CONFIG_FILE - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: OpenSSH config filename.
SSHConnection - Class in nl.esciencecenter.xenon.adaptors.shared.ssh
SSHConnection(int) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
SshInteractiveProcess - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh: LocalBatchProcess implements a InteractiveProcess for local batch processes.
SshInteractiveProcess(ClientSession, JobDescription, String, long) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
SshInteractiveProcessFactory - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh
SshInteractiveProcessFactory(SSHConnection) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcessFactory
SshSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.ssh
SshSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
SSHUtil - Class in nl.esciencecenter.xenon.adaptors.shared.ssh
SSHUtil() - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: This constructor is only needed for testing.
SSHUtil.PasswordProvider - Class in nl.esciencecenter.xenon.adaptors.shared.ssh
SSHUtil.Tunnel - Class in nl.esciencecenter.xenon.adaptors.shared.ssh
stack - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem.RecursiveListIterator
stack - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.RecursiveListIterator
start(long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
started - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyCallback
startInteractiveCommand(String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Start an interactive command on the remote machine (usually via ssh).
startSingleProcess - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: If true, only a single process is started on the first node aquired, instead of nodeCount * processesPerNode.
startsWith(Path) - Method in class nl.esciencecenter.xenon.filesystems.Path: Tests if this Path starts with the given Path.
startsWith(String) - Method in class nl.esciencecenter.xenon.filesystems.Path: Tests if this Path starts with the given Path represented as a String.
startsWithLinuxRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Checks if the provide path starts with a valid Linux root, that is "/".
startupTimeout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
startupTimeout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
startWithRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Checks if the provide path starts with a valid root, such as "/" or "C:".
startWithWindowsRoot(String) - Static method in class nl.esciencecenter.xenon.utils.LocalFileSystemUtils: Checks if the provide path starts with a valid Windows root, for example "C:".
stat(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
state - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
state - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
state - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
stderr - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
stderr - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The location file which to redirect stderr to.
stderrForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
stdin - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
stdin - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The location file from which to redirect stdin.
stdinForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
stdout - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation
stdout - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The location file which to redirect stdout to.
stdoutForwarder - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess
streamCopy(InputStream, OutputStream, int, FileSystem.CopyCallback) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Copy data from in to out using a buffer size of buffersize.
StreamForwarder - Class in nl.esciencecenter.xenon.utils: A simple stream forwarder that uses a daemon thread to read from an InputStream and write it to a OutputStream.
StreamForwarder(String, InputStream, OutputStream, int) - Constructor for class nl.esciencecenter.xenon.utils.StreamForwarder: Create a new StreamForwarder and start it immediately.
StreamForwarder(InputStream, OutputStream) - Constructor for class nl.esciencecenter.xenon.utils.StreamForwarder: Create a new StreamForwarder and start it immediately.
streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalInteractiveProcess
streams - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshInteractiveProcess
Streams - Interface in nl.esciencecenter.xenon.schedulers: Streams is a container for the standard input, output and error streams of a job.
StreamsImplementation - Class in nl.esciencecenter.xenon.adaptors.schedulers: Streams is a container for the standard input, output and error streams of a job.
StreamsImplementation(String, InputStream, OutputStream, InputStream) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.StreamsImplementation: Create a Streams containing the job and its standard streams.
StreamToFileWriter(String, InputStream) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter
STRICT_HOST_KEY_CHECKING - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: Enable strict host key checking.
STRICT_HOST_KEY_CHECKING - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Enable strict host key checking.
subFileSystem - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
submit(JobDescription, boolean) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
submitBatchJob(JobDescription) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Submit a batch job.
submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
submitInteractiveJob(JobDescription) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Submit an interactive job (optional operation).
SUBMITTED - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: How many jobs have been submitted locally.
SUBMITTED - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: How many jobs have been submitted using this adaptor.
subpath(int, int) - Method in class nl.esciencecenter.xenon.filesystems.Path: Returns a Path that is a subsequence of the name elements of this path.
subScheduler - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
success() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
SUPPORTED_VERSIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
supportedLocations - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor
supportedProperties - Variable in class nl.esciencecenter.xenon.adaptors.Adaptor
supportsBatch() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
supportsBatch() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription: Does this Scheduler support the submission of batch jobs ? For batch jobs the standard streams of the jobs are redirected from and to files.
supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor
supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor
supportsInteractive() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor
supportsInteractive() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription: Does this Scheduler supports the submission of interactive jobs ? For interactive jobs the standard streams of the job must be handled by the submitting process.
supportsProperty(String) - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Check if this XenonProperties supports a property with the given name.
supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
supportsReadingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
supportsReadingPosixPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
supportsRename() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
supportsRename() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
supportsRename() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor
supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor
supportsSettingPosixPermissions() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor
supportsSettingPosixPermissions() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription
supportsThirdPartyCopy() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.FileAdaptor
supportsThirdPartyCopy() - Method in interface nl.esciencecenter.xenon.filesystems.FileSystemAdaptorDescription: Does this adaptor support third party copy ? In third party copy, a file is copied between two remote locations, without passing through the local machine first.

T

tempSpace - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The tempspace needed (in MB) on each node/process.
terminate(long) - Method in class nl.esciencecenter.xenon.utils.StreamForwarder: Wait for a given timeout for the StreamForwarder to terminate by reading an end-of-stream on the input.
TERMINATION_DELAY - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.BatchProcess: Time to wait for a StreamForwarder to terminate (in ms.)
threadsPerProcess - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The number of threads the executable will use per processes
TIMEOUT - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: Add gateway to access machine.
toAbsolutePath(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Convert the provided path to an absolute path by (if necessary) resolving a relative path against the working directory of this FileSystem.
toAbsolutePath() - Method in class nl.esciencecenter.xenon.filesystems.Path
toBucketEntry(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
toHDFSPath(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
toMap() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties: Returns all properties that are set in a new Map.
toPathAttributes(FileStatus) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
toPathAttributes(StorageMetadata) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
toPermissionSet(FsPermission) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
toRelativePath() - Method in class nl.esciencecenter.xenon.filesystems.Path
TorqueScheduler - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque: Interface to the TORQUE command line tools.
TorqueScheduler(String, String, Credential, XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
TorqueSchedulerAdaptor - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque: Adaptor for TORQUE batch system.
TorqueSchedulerAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor
TorqueUtils - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque: Generator for GridEngine job script.
TorqueUtils() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
TorqueXmlParser - Class in nl.esciencecenter.xenon.adaptors.schedulers.torque: Parses xml output from TORQUE batch system.
TorqueXmlParser() - Constructor for class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueXmlParser
toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpInputStream
toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
toString() - Method in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation
toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo
toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.QueueInfo
toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobStatusImplementation
toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.QueueStatusImplementation
toString() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.RemoteCommandRunner
toString() - Method in class nl.esciencecenter.xenon.adaptors.XenonProperties
toString() - Method in class nl.esciencecenter.xenon.credentials.CertificateCredential
toString() - Method in class nl.esciencecenter.xenon.credentials.PasswordCredential
toString() - Method in class nl.esciencecenter.xenon.filesystems.FileSystem.CopyStatusImplementation
toString() - Method in class nl.esciencecenter.xenon.filesystems.Path
toString() - Method in class nl.esciencecenter.xenon.schedulers.JobDescription
toString() - Method in class nl.esciencecenter.xenon.utils.JavaJobDescription
toString() - Method in class nl.esciencecenter.xenon.XenonPropertyDescription
translateError(RemoteCommandRunner, String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler
translateError(RemoteCommandRunner, String, String, String...) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmScheduler
translateProperties(Map<String, String>, String, XenonPropertyDescription[], String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
triggerStatusUpdate() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Signal the polling thread to produce a status update.
Tunnel(ServerSocket, ChannelDirectTcpip, int) - Constructor for class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil.Tunnel
tunnels - Variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHConnection
type - Variable in class nl.esciencecenter.xenon.XenonPropertyDescription
Type() - Constructor for enum nl.esciencecenter.xenon.XenonPropertyDescription.Type

U

uniqueID - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
uniqueID - Variable in class nl.esciencecenter.xenon.schedulers.Scheduler
UnknownAdaptorException - Exception in nl.esciencecenter.xenon: Thrown when an unknown adaptor name is provided.
UnknownAdaptorException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnknownAdaptorException
UnknownAdaptorException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnknownAdaptorException
UnknownPropertyException - Exception in nl.esciencecenter.xenon: Signals that a property has a different type than the get method it was retrieved with.
UnknownPropertyException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnknownPropertyException
UnknownPropertyException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnknownPropertyException
UNLIMITED_QUEUE_NAME - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
unlimitedExecutor - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
unlimitedQ - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
UnsupportedJobDescriptionException - Exception in nl.esciencecenter.xenon.schedulers: Signals that a combination of options used in a JobDescription is not supported by a resource.
UnsupportedJobDescriptionException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException
UnsupportedJobDescriptionException(String, String) - Constructor for exception nl.esciencecenter.xenon.schedulers.UnsupportedJobDescriptionException
UnsupportedOperationException - Exception in nl.esciencecenter.xenon: Throw when an unsupported optional operation is called.
UnsupportedOperationException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.UnsupportedOperationException
UnsupportedOperationException(String, String) - Constructor for exception nl.esciencecenter.xenon.UnsupportedOperationException
updateJobsSeenMap(Set<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineScheduler
updateJobsSeenMap(Set<String>) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueScheduler
updateSignal - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
updateState(String, int, XenonException) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
url - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem.StreamToFileWriter
USER_TYPES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
UserCredential - Interface in nl.esciencecenter.xenon.credentials
username - Variable in class nl.esciencecenter.xenon.credentials.DefaultCredential
username - Variable in class nl.esciencecenter.xenon.credentials.KeytabCredential
username - Variable in class nl.esciencecenter.xenon.credentials.PasswordCredential: The user name associated with the credential.
usesFileSystem() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.SchedulerAdaptor
usesFileSystem() - Method in interface nl.esciencecenter.xenon.schedulers.SchedulerAdaptorDescription: Does this Scheduler create a FileSystem to support the submission of jobs ? Many scheduler implementations use a FileSystem internally to handle job submission, for example to store submission scripts or handle the standard I/O streams of a process.

V

VALID_JOB_OPTIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
VALID_JOB_OPTIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
VALID_JOB_OPTIONS - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor: List of properties supported by this FTP adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileAdaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileAdaptor: List of properties supported by this FTP adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.s3.S3FileAdaptor: List of properties supported by this FTP adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileAdaptor: List of properties supported by this SSH adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor: List of properties supported by this FTP adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineSchedulerAdaptor: List of all properties supported by this adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.local.LocalSchedulerAdaptor: The properties supported by this adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSchedulerAdaptor: List of all properties supported by this adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ssh.SshSchedulerAdaptor: List of properties supported by this SSH adaptor
VALID_PROPERTIES - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueSchedulerAdaptor: List of all properties supported by this adaptor
validateHost(String, String) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil: Weak validation of a host string containing either a hostame of IP adres.
validProperties(XenonPropertyDescription[]) - Static method in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil
valueOf(String) - Static method in enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum nl.esciencecenter.xenon.filesystems.CopyMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum nl.esciencecenter.xenon.XenonPropertyDescription.Type: Returns the enum constant of this type with the specified name.
values() - Static method in enum nl.esciencecenter.xenon.adaptors.schedulers.gridengine.ParallelEnvironmentInfo.AllocationRule: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum nl.esciencecenter.xenon.filesystems.CopyMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum nl.esciencecenter.xenon.filesystems.PosixFilePermission: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum nl.esciencecenter.xenon.XenonPropertyDescription.Type: Returns an array containing the constants of this enum type, in the order they are declared.
verifyJobDescription(JobDescription) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.gridengine.GridEngineUtils
verifyJobDescription(JobDescription, boolean) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
verifyJobDescription(JobDescription, String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils: Do some checks on a job description.
verifyJobDescription(JobDescription, boolean) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmUtils
verifyJobDescription(JobDescription) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.torque.TorqueUtils
verifyJobInfo(Map<String, String>, String, String, String, String...) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils: Check if the info map for a job exists, contains the expected job ID, and contains the given additional fields
verifyJobOptions(Map<String, String>, String[], String) - Static method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingUtils
verifyLoginSuccess(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileAdaptor
version - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
version() - Method in class nl.esciencecenter.xenon.adaptors.schedulers.slurm.SlurmSetup
VIA_TAG - Static variable in class nl.esciencecenter.xenon.adaptors.shared.ssh.SSHUtil

W

waitForStatusUpdate(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor: Wait for a certain amount of time for an update.
waitUntilDone(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Wait until a Job is done, or until the give timeout expires (whichever comes first).
waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Wait until a copy operation is done or until a timeout expires.
waitUntilDone(String, long) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Wait until a job is done or until a timeout expires.
waitUntilFinished() - Method in class nl.esciencecenter.xenon.utils.InputWriter: Wait until the InputWriter has finished writing.
waitUntilFinished() - Method in class nl.esciencecenter.xenon.utils.OutputReader: Waits until the OutputReader has finished (i.e., has reached the end-of-stream on the input).
waitUntilRunning(long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingScheduler: Wait until a Job is running (or already done), or until the given timeout expires, whichever comes first.
waitUntilRunning(String, long) - Method in class nl.esciencecenter.xenon.schedulers.Scheduler: Wait until a job starts running, or until a timeout expires.
WebdavFileAdaptor - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav
WebdavFileAdaptor() - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileAdaptor
WebdavFileSystem - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav
WebdavFileSystem(String, String, String, Credential, String, Path, int, Sardine, XenonProperties) - Constructor for class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
WebdavFileSystem.StreamToFileWriter - Class in nl.esciencecenter.xenon.adaptors.filesystems.webdav
WHITESPACE_REGEX - Static variable in class nl.esciencecenter.xenon.adaptors.schedulers.ScriptingParser
workingDirectory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobExecutor
workingDirectory - Variable in class nl.esciencecenter.xenon.adaptors.schedulers.JobQueueScheduler
workingDirectory - Variable in class nl.esciencecenter.xenon.filesystems.FileSystem
workingDirectory - Variable in class nl.esciencecenter.xenon.schedulers.JobDescription: The working directory for the job.
writable - Variable in class nl.esciencecenter.xenon.adaptors.filesystems.PathAttributesImplementation: Is the file writable ?
write(int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
write(byte[]) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
write(byte[], int, int) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpOutputStream
WRITE_GROUP - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: write by group
WRITE_OTHERS - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: write by others
WRITE_OWNER - Static variable in class nl.esciencecenter.xenon.adaptors.filesystems.PosixFileUtils: write by owner
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.ftp.FtpFileSystem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.hdfs.HDFSFileSystem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.jclouds.JCloudsFileSytem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.sftp.SftpFileSystem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
writeToFile(Path) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.webdav.WebdavFileSystem
writeToFile(Path, long) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Open a file and return an OutputStream to write to this file.
writeToFile(Path) - Method in class nl.esciencecenter.xenon.filesystems.FileSystem: Open a file and return an OutputStream to write to this file.

X

XenonException - Exception in nl.esciencecenter.xenon: XenonException is the parent exception for all exceptions raised in Xenon.
XenonException(String, String) - Constructor for exception nl.esciencecenter.xenon.XenonException
XenonException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.XenonException
xenonPermissions(Set<PosixFilePermission>) - Method in class nl.esciencecenter.xenon.adaptors.filesystems.local.LocalFileSystem
XenonProperties - Class in nl.esciencecenter.xenon.adaptors: Read-only properties implementation.
XenonProperties(Map<String, XenonPropertyDescription>, Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties: Private constructor for XenonProperties using in copying and filtering.
XenonProperties() - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties: Creates an empty XenonProperties.
XenonProperties(XenonPropertyDescription[], Map<String, String>) - Constructor for class nl.esciencecenter.xenon.adaptors.XenonProperties: Create a new XenonProperties that will support the properties in supportedProperties.
XenonPropertyDescription - Class in nl.esciencecenter.xenon: XenonPropertyDescription contains all necessary information about a property that is recognized by Xenon
XenonPropertyDescription(String, XenonPropertyDescription.Type, String, String) - Constructor for class nl.esciencecenter.xenon.XenonPropertyDescription
XenonPropertyDescription.Type - Enum in nl.esciencecenter.xenon: This Type enumeration lists all possible types of properties recognized by Xenon.
XenonRuntimeException - Exception in nl.esciencecenter.xenon: XenonRuntimeException is the parent for all runtime exceptions raised in Xenon.
XenonRuntimeException(String, String) - Constructor for exception nl.esciencecenter.xenon.XenonRuntimeException
XenonRuntimeException(String, String, Throwable) - Constructor for exception nl.esciencecenter.xenon.XenonRuntimeException

A B C D E F G H I J K L M N O P Q R S T U V W X