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Xenonflow: Scientific Workflows through a REST API

Xenonflow allows you to run CWL workflows using Xenon on a compute resource through a REST api.

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In this tutorial we will go download, install and set up Xenonflow and run a first workflow from the command line.

  1. Dependencies: The dependencies of xenonflow are:
    • Java 11 (a higher version may work as well)
    • a cwl runner (We will be using the cwl reference runner cwltool)